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Table 5 PTPN22-1858C/T genotypes frequencies in the affected sib-pair (ASP) rheumatoid arthritis (RA) sample

From: Rheumatoid arthritis seropositive for the rheumatoid factor is linked to the protein tyrosine phosphatase nonreceptor 22-620W allele

 

PTPN22-1858C/T genotype frequencies [% (n)]

P a

 

C/C

C/T

T/T

C/T or T/T

 

ASP RA index cases RF+ (n = 74) versus controlsb (n = 200)

66 (49)

31 (23)

3 (2)

34 (25)

0.15

ASP RA index cases RF+ and IBD1 or IBD2 at the PTPN22 locus with their RF+-concordant RA sib (n = 42) versus controlsb (n = 200)

71 (30)

26 (11)

3 (1)

29 (12)

0.63

All ASP RA index cases (n = 88) versus controlsb (n = 200)

69 (61)

29 (25)

2 (2)

31 (27)

0.32

  1. RF+, seropositive for rheumatoid factor; IBD1 or IBD2, index sharing 1 or 2 identical by descent allele with the RA sib.
  2. aFollowing data previously reported in RA and because of the infrequency of the PTPN22-1858T/T genotype, it was combined with the 1858C/T genotype for the analysis.
  3. bControls derived from all non transmitted parental chromosomes.