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Table 2 SNP markers used in analysis

From: Association of common polymorphisms in known susceptibility genes with rheumatoid arthritis in a Slovak population using osteoarthritis patients as controls

SNP

Positiona

Major allele (1)

Minor allele (2)

Gene/function

rs2476601

chr 1: 114,179,091

G

A

PTPN22/R620W

rs7574865

chr 2: 191,672,878

G

T

STAT4/Intron

rs10499194

chr 6: 138,044,330

C

T

intergenic between OLIG3 and TNFAIP3

rs6920220

chr 6: 138,048,197

G

A

intergenic between OLIG3 and TNFAIP3

rs3761847

chr 9: 122,730,060

A

G

intergenic between TRAF1 and C5

rs10818488

chr 9: 122,744,908

G

A

intergenic between TRAF1 and C5

  1. a according to NCBI build 36.3.
  2. SNP = single nucleotide polymorphism.