Table 2 Interferon response gene/transcript sets used in this study
IFN set (34 genes) | Validation (15 genes) | Symbol | NCBI mRNA accession number | Name |
|---|---|---|---|---|
X | AA075725 | AA075725.1 | None | |
X | AA142842 | AA142842.1 | None | |
X | AI347124 | AI347124.1 | None | |
X | ATF3 | NM_001030287 | Activating transcription factor 3 | |
X | EIF2AK2 | NM_001135651 | Eukaryotic translation initiation factor 2-alpha kinase 2 | |
X | X | EPSTI1 | NM_001002264 | Epithelial stromal interaction 1 (breast) |
X | Hs.128576 | NM_001135993 | CDNA FLJ90394 fis, clone NT2RP2005632 | |
X | Hs.97872 | AI821640 | Transcribed locus | |
X | IFI16 | NM_005531 | Interferon, gamma-inducible protein 16 | |
X | X | IFI35 | NM_005533 | Interferon-induced protein 35 |
X | X | IFI44L | NM_006820 | Interferon-induced protein 44-like |
X | X | IFI6 | NM_002038 | Interferon, alpha-inducible protein 6 |
X | X | IFIT1 | NM_001548 | Interferon-induced protein with tetratricopeptide repeats 1 |
X | IFIT2 | NM_001547 | Interferon-induced protein with tetratricopeptide repeats 2 | |
X | X | IFITM1 | NM_003641 | Interferon-induced transmembrane protein 1 (9-27) |
X | IL1RN | NM_000577 | Interleukin 1 receptor antagonist | |
X | X | IRF2 | NM_002199 | Interferon regulatory factor 2 |
X | IRF7 | NM_001572 | Interferon regulatory factor 7 | |
X | X | ISG15 | NM_005101 | ISG15 ubiquitin-like modifier |
X | X | LGALS3BP | NM_005567 | Lectin, galactoside-binding, soluble, 3 binding protein |
X | MX1 | NM_001144925 | Myxovirus (influenza virus) resistance 1 | |
X | X | MX2 | NM_002463 | Myxovirus (influenza virus) resistance 2 (mouse) |
X | X | OAS1 | NM_001032409 | 2',5' -oligoadenylate synthetase 1, 40/46 kDa |
X | X | OAS2 | NM_001032731 | 2' -5' -oligoadenylate synthetase 2, 69/71 kDa |
X | PARP14 | NM_017554 | Poly (ADP-ribose) polymerase family, member 14 | |
X | PLSCR1 | NM_021105 | Phospholipid scramblase 1 | |
X | RNF213 | NM_020914 | Ring finger protein 213 | |
X | X | RSAD2 | NM_080657 | Radical S-adenosyl methionine domain containing 2 (alias cig5) |
X | RTP4 | NM_022147 | Receptor (chemosensory) transporter protein 4 | |
X | X | SAMD9L | NM_152703 | Sterile alpha motif domain containing 9-like |
X | X | SERPING1 | NM_000062 | Serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 |
X | TAP1 | NM_000593 | Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) | |
X | TNFAIP6 | NM_007115 | Tumor necrosis factor, alpha-induced protein 6 | |
X | UBE2L6 | NM_004223 | Ubiquitin-conjugating enzyme E2L 6 |