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Table 2 Interferon response gene/transcript sets used in this study

From: Regulation of IFN response gene activity during infliximab treatment in rheumatoid arthritis is associated with clinical response to treatment

IFN set
(34 genes)
Validation (15 genes) Symbol NCBI mRNA accession number Name
X   AA075725 AA075725.1 None
X   AA142842 AA142842.1 None
X   AI347124 AI347124.1 None
X   ATF3 NM_001030287 Activating transcription factor 3
X   EIF2AK2 NM_001135651 Eukaryotic translation initiation factor 2-alpha kinase 2
X X EPSTI1 NM_001002264 Epithelial stromal interaction 1 (breast)
X   Hs.128576 NM_001135993 CDNA FLJ90394 fis, clone NT2RP2005632
X   Hs.97872 AI821640 Transcribed locus
X   IFI16 NM_005531 Interferon, gamma-inducible protein 16
X X IFI35 NM_005533 Interferon-induced protein 35
X X IFI44L NM_006820 Interferon-induced protein 44-like
X X IFI6 NM_002038 Interferon, alpha-inducible protein 6
X X IFIT1 NM_001548 Interferon-induced protein with tetratricopeptide repeats 1
X   IFIT2 NM_001547 Interferon-induced protein with tetratricopeptide repeats 2
X X IFITM1 NM_003641 Interferon-induced transmembrane protein 1 (9-27)
X   IL1RN NM_000577 Interleukin 1 receptor antagonist
X X IRF2 NM_002199 Interferon regulatory factor 2
X   IRF7 NM_001572 Interferon regulatory factor 7
X X ISG15 NM_005101 ISG15 ubiquitin-like modifier
X X LGALS3BP NM_005567 Lectin, galactoside-binding, soluble, 3 binding protein
X   MX1 NM_001144925 Myxovirus (influenza virus) resistance 1
X X MX2 NM_002463 Myxovirus (influenza virus) resistance 2 (mouse)
X X OAS1 NM_001032409 2',5' -oligoadenylate synthetase 1, 40/46 kDa
X X OAS2 NM_001032731 2' -5' -oligoadenylate synthetase 2, 69/71 kDa
X   PARP14 NM_017554 Poly (ADP-ribose) polymerase family, member 14
X   PLSCR1 NM_021105 Phospholipid scramblase 1
X   RNF213 NM_020914 Ring finger protein 213
X X RSAD2 NM_080657 Radical S-adenosyl methionine domain containing 2 (alias cig5)
X   RTP4 NM_022147 Receptor (chemosensory) transporter protein 4
X X SAMD9L NM_152703 Sterile alpha motif domain containing 9-like
X X SERPING1 NM_000062 Serpin peptidase inhibitor, clade G (C1 inhibitor), member 1
X   TAP1 NM_000593 Transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
X   TNFAIP6 NM_007115 Tumor necrosis factor, alpha-induced protein 6
X   UBE2L6 NM_004223 Ubiquitin-conjugating enzyme E2L 6
  1. IFN, interferon; NCBI, National Center for Biotechnology Information.