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Table 3 Overlapping peptide set derived from chicken-origin collagen type II fragment number 11 after cyanobromide digestion

From: Collagen-induced arthritis in common marmosets: a new nonhuman primate model for chronic arthritis

Name Amino acid numbersa Amino acid sequence
1234567890123456789012345
pep 1 124 to 149 GPRGLPGERGRPGPSGAAGARGNDG
pep 2 140 to 165 GAAGARGNDGLPGPAGPPGPVGPAG
pep 3 155 to 180 GPPGPVGPAGAPGFPGAPGSKGEAG
pep 4 170 to 195 GAPGSKGEAGPTGARGPEGAQGPRG
pep 5 185 to 210 GPEGAQGPRGESGTPGSPGPAGAPG
pep 6 200 to 225 GSPGPAGAPGNPGTDGIPGAKGSAG
pep 7 215 to 240 GIPGAKGSAGAPGIAGAPGFPGPRG
pep 8 230 to 255 GAPGFPGPRGPPGPQGATGPLGPKG
pep 9 245 to 270 GATGPLGPKGQTGEPGIAGFKGEQG
pep 10 a 251 to 276 GPKGQTGEPGIAGF K GEQGPKGETG
pep 11 260 to 285 GIAGFKGEQGPKGETGPAGPQGAPG
pep 12 275 to 300 GPAGPQGAPGPAGEEGKRGARGEPG
pep 13 290 to 315 GKRGARGEPGAAGPVGPPGERGAPG
pep 14 305 to 330 GPPGERGAPGNRGFPGQDGLAGPKG
pep 15 320 to 345 GQDGLAGPKGAPGERGPAGLAGPKG
pep 16 335 to 360 GPAGLAGPKGATGDPGRPGEPGLPG
pep 17 350 to 375 GRPGEPGLPGARGLTGRPGDAGPQG
pep 18 365 to 380 GRPGDAGPQGKVGPTGAPGEDGRPG
pep 19 370 to 395 GAPGEDGRPGPPGPQGARGQPGVMG
pep 20 374 to 400 EDGRPGPPGPQGARGQPGVMGFPGP
  1. Overlapping peptide set derived from chicken-origin collagen type II (ch-CII) fragment number 11 after cyanobromide digestion and separation on high-performance liquid chromatography (CB11; ch-CIIaa 124 to 402). ach-CII amino acid 124 = aa1. bThis peptide contains the immunodominant glycopeptide [29].