From: Investigating a pathogenic role for TXNDC5 in rheumatoid arthritis
Haplotype | Freq. | Case, control ratio counts | Case, control frequencies | P-value |
---|---|---|---|---|
Block 1 | Â | Â | Â | Â |
AGGG | 0.755 | 75.0: 27.0, 242.0: 76.0 | 0.735, 0.761 | 0.5994 |
GAAA | 0.136 | 15.0: 87.0, 42.0: 276.0 | 0.147, 0.132 | 0.7006 |
AAGG | 0.1 | 11.0: 91.0, 31.0: 287.0 | 0.108, 0.097 | 0.7616 |
Block 2 | Â | Â | Â | Â |
AAAGAAG | 0.541 | 45.0: 57.0, 182.2: 135.8 | 0.441, 0.573 | 0.0198 |
GAAAGGA | 0.23 | 34.0: 68.0, 62.5: 255.5 | 0.333, 0.196 | 0.0043 |
GGGAGAG | 0.126 | 13.0: 89.0, 40.0: 278.0 | 0.127, 0.126 | 0.9686 |
GAAGAAG | 0.065 | 6.0: 96.0, 21.3: 296.7 | 0.059, 0.067 | 0.7731 |
Block 3 | Â | Â | Â | Â |
AGGAGGGGA | 0.609 | 49.7: 51.9, 206.0: 112.0 | 0.489, 0.648 | 0.0044 |
CGAGCAAAC | 0.187 | 29.8: 71.8, 49.0: 269.0 | 0.293, 0.154 | 0.0018 |
CAGGCAAGA | 0.134 | 14.3: 87.3, 42.0: 276.0 | 0.140, 0.132 | 0.829 |
CGAGCAAAA | 0.022 | 1.2: 100.4, 8.0: 310.0 | 0.012, 0.025 | 0.4324 |
CGAGCAAGA | 0.017 | 4.0: 97.6, 3.0: 315.0 | 0.039, 0.010 | 0.0408 |
CAAGCAAGA | 0.012 | 0.0: 101.6, 5.0: 313.0 | 0.000, 0.016 | 0.2042 |
Block 4 | Â | Â | Â | Â |
GG | 0.664 | 58.0: 44.0, 221.0: 97.0 | 0.569, 0.695 | 0.0187 |
AA | 0.228 | 28.0: 74.0, 67.7: 250.3 | 0.275, 0.213 | 0.1962 |
AG | 0.108 | 16.0: 86.0, 29.3: 288.7 | 0.157, 0.092 | 0.067 |
Block 5 | Â | Â | Â | Â |
AAA | 0.523 | 45.9: 56.1, 173.7: 144.3 | 0.450, 0.546 | 0.0915 |
AGC | 0.29 | 33.3: 68.7, 88.6: 229.4 | 0.327, 0.279 | 0.3548 |
GGC | 0.097 | 7.6: 94.4, 33.0: 285.0 | 0.075, 0.104 | 0.3851 |
AAC | 0.072 | 10.7: 91.3, 19.4: 298.6 | 0.105, 0.061 | 0.1339 |
AGA | 0.013 | 4.1: 97.9, 1.3: 316.7 | 0.040, 0.004 | 0.0053 |
Block 6 | Â | Â | Â | Â |
AAA | 0.709 | 77.9: 24.1, 219.8: 98.2 | 0.764, 0.691 | 0.159 |
AGG | 0.101 | 9.5: 92.5, 32.9: 285.1 | 0.093, 0.104 | 0.7639 |
GGG | 0.096 | 9.4: 92.6, 30.9: 287.1 | 0.092, 0.097 | 0.8872 |
AGA | 0.084 | 5.0: 97.0, 30.1: 287.9 | 0.049, 0.095 | 0.1475 |
Block 7 | Â | Â | Â | Â |
AA | 0.683 | 70.0: 32.0, 217.0: 101.0 | 0.686, 0.682 | 0.9415 |
AG | 0.221 | 23.0: 79.0, 70.0: 248.0 | 0.225, 0.220 | 0.9096 |
GG | 0.095 | 9.0: 93.0, 31.0: 287.0 | 0.088, 0.097 | 0.7819 |
Block 8 | Â | Â | Â | Â |
GAAGA | 0.49 | 53.9: 48.1, 151.8: 166.2 | 0.529, 0.477 | 0.3656 |
GAAAA | 0.198 | 21.1: 80.9, 62.1: 255.9 | 0.206, 0.195 | 0.8077 |
AAAAG | 0.14 | 14.0: 88.0, 44.9: 273.1 | 0.137, 0.141 | 0.9123 |
AAAAA | 0.059 | 3.0: 99.0, 22.0: 296.0 | 0.029, 0.069 | 0.14 |
ACGAA | 0.057 | 5.0: 97.0, 19.0: 299.0 | 0.049, 0.060 | 0.6831 |
AAGAA | 0.042 | 4.0: 98.0, 13.9: 304.1 | 0.039, 0.044 | 0.8369 |
Block 9 | Â | Â | Â | Â |
AT | 0.517 | 53.0: 49.0, 164.0: 154.0 | 0.520, 0.516 | 0.9455 |
GA | 0.28 | 26.6: 75.4, 91.0: 227.0 | 0.261, 0.286 | 0.6165 |
GT | 0.203 | 22.4: 79.6, 63.0: 255.0 | 0.220, 0.198 | 0.6357 |
Block 10 | Â | Â | Â | Â |
AG | 0.802 | 78.2: 23.8, 258.5: 59.5 | 0.767, 0.813 | 0.3066 |
GA | 0.161 | 18.7: 83.3, 48.8: 269.2 | 0.184, 0.153 | 0.4683 |
GG | 0.032 | 3.8: 98.2, 9.5: 308.5 | 0.037, 0.030 | 0.7032 |