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Table 5 Haplotype frequencies in a case-control cohort of patients with ankylosing spondylitis

From: Investigating a pathogenic role for TXNDC5 in rheumatoid arthritis

Haplotype

Freq.

Case, control ratio counts

Case, control frequencies

P-value

Block 1

    

AGGG

0.755

75.0: 27.0, 242.0: 76.0

0.735, 0.761

0.5994

GAAA

0.136

15.0: 87.0, 42.0: 276.0

0.147, 0.132

0.7006

AAGG

0.1

11.0: 91.0, 31.0: 287.0

0.108, 0.097

0.7616

Block 2

    

AAAGAAG

0.541

45.0: 57.0, 182.2: 135.8

0.441, 0.573

0.0198

GAAAGGA

0.23

34.0: 68.0, 62.5: 255.5

0.333, 0.196

0.0043

GGGAGAG

0.126

13.0: 89.0, 40.0: 278.0

0.127, 0.126

0.9686

GAAGAAG

0.065

6.0: 96.0, 21.3: 296.7

0.059, 0.067

0.7731

Block 3

    

AGGAGGGGA

0.609

49.7: 51.9, 206.0: 112.0

0.489, 0.648

0.0044

CGAGCAAAC

0.187

29.8: 71.8, 49.0: 269.0

0.293, 0.154

0.0018

CAGGCAAGA

0.134

14.3: 87.3, 42.0: 276.0

0.140, 0.132

0.829

CGAGCAAAA

0.022

1.2: 100.4, 8.0: 310.0

0.012, 0.025

0.4324

CGAGCAAGA

0.017

4.0: 97.6, 3.0: 315.0

0.039, 0.010

0.0408

CAAGCAAGA

0.012

0.0: 101.6, 5.0: 313.0

0.000, 0.016

0.2042

Block 4

    

GG

0.664

58.0: 44.0, 221.0: 97.0

0.569, 0.695

0.0187

AA

0.228

28.0: 74.0, 67.7: 250.3

0.275, 0.213

0.1962

AG

0.108

16.0: 86.0, 29.3: 288.7

0.157, 0.092

0.067

Block 5

    

AAA

0.523

45.9: 56.1, 173.7: 144.3

0.450, 0.546

0.0915

AGC

0.29

33.3: 68.7, 88.6: 229.4

0.327, 0.279

0.3548

GGC

0.097

7.6: 94.4, 33.0: 285.0

0.075, 0.104

0.3851

AAC

0.072

10.7: 91.3, 19.4: 298.6

0.105, 0.061

0.1339

AGA

0.013

4.1: 97.9, 1.3: 316.7

0.040, 0.004

0.0053

Block 6

    

AAA

0.709

77.9: 24.1, 219.8: 98.2

0.764, 0.691

0.159

AGG

0.101

9.5: 92.5, 32.9: 285.1

0.093, 0.104

0.7639

GGG

0.096

9.4: 92.6, 30.9: 287.1

0.092, 0.097

0.8872

AGA

0.084

5.0: 97.0, 30.1: 287.9

0.049, 0.095

0.1475

Block 7

    

AA

0.683

70.0: 32.0, 217.0: 101.0

0.686, 0.682

0.9415

AG

0.221

23.0: 79.0, 70.0: 248.0

0.225, 0.220

0.9096

GG

0.095

9.0: 93.0, 31.0: 287.0

0.088, 0.097

0.7819

Block 8

    

GAAGA

0.49

53.9: 48.1, 151.8: 166.2

0.529, 0.477

0.3656

GAAAA

0.198

21.1: 80.9, 62.1: 255.9

0.206, 0.195

0.8077

AAAAG

0.14

14.0: 88.0, 44.9: 273.1

0.137, 0.141

0.9123

AAAAA

0.059

3.0: 99.0, 22.0: 296.0

0.029, 0.069

0.14

ACGAA

0.057

5.0: 97.0, 19.0: 299.0

0.049, 0.060

0.6831

AAGAA

0.042

4.0: 98.0, 13.9: 304.1

0.039, 0.044

0.8369

Block 9

    

AT

0.517

53.0: 49.0, 164.0: 154.0

0.520, 0.516

0.9455

GA

0.28

26.6: 75.4, 91.0: 227.0

0.261, 0.286

0.6165

GT

0.203

22.4: 79.6, 63.0: 255.0

0.220, 0.198

0.6357

Block 10

    

AG

0.802

78.2: 23.8, 258.5: 59.5

0.767, 0.813

0.3066

GA

0.161

18.7: 83.3, 48.8: 269.2

0.184, 0.153

0.4683

GG

0.032

3.8: 98.2, 9.5: 308.5

0.037, 0.030

0.7032