Table 6 Allele and genotype frequencies in a case-control cohort of patients with RA
From: Investigating a pathogenic role for TXNDC5 in rheumatoid arthritis
dbSNP identity | Allele/ Genotype | No. of patients with RA (%) | No. of controls (%) | Fisher's P-value |
|---|---|---|---|---|
rs2277105 | C | 1581 (0.840) | 1512 (0.848) | 0.491098 |
| Â | O(freq) | 19 (0.010) | 12 (0.007) | Â |
| Â | T | 283 (0.150) | 260 (0.146) | Â |
| Â | CC | 670 (0.719) | 650 (0.734) | 0.549842 |
| Â | CT | 241 (0.259) | 212 (0.239) | Â |
| Â | TT | 21 (0.023) | 24 (0.027) | Â |
rs11962800 | A | 1568 (0.831) | 1523 (0.853) | 0.173781 |
| Â | O(freq) | 15 (0.008) | 11 (0.006) | Â |
| Â | G | 304 (0.161) | 251 (0.141) | Â |
| Â | AA | 656 (0.701) | 656 (0.740) | 0.184145 |
| Â | AG | 256 (0.274) | 211 (0.238) | Â |
| Â | GG | 24 (0.026) | 20 (0.023) | Â |
rs443861 | A | 357 (0.190) | 275 (0.154) | 0.00832 |
| Â | O(freq) | 19 (0.010) | 12 (0.007) | Â |
| Â | G | 1507 (0.800) | 1497 (0.839) | Â |
| Â | AA | 51 (0.055) | 26 (0.029) | 0.01011 |
| Â | AG | 255 (0.274) | 223 (0.252) | Â |
| Â | GG | 626 (0.672) | 637 (0.719) | Â |
rs369086 | A | 485 (0.257) | 460 (0.258) | 0.510123 |
| Â | O(freq) | 18 (0.010) | 11 (0.006) | Â |
| Â | G | 1381 (0.733) | 1314 (0.736) | Â |
| Â | AA | 61 (0.065) | 71 (0.080) | 0.260584 |
| Â | AG | 363 (0.389) | 318 (0.359) | Â |
| Â | GG | 509 (0.546) | 498 (0.561) | Â |