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Table 1 Autoantibodies differentially expressed between circulation and joint

From: Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays

Expression Autoantigen UniProt accession Gene name Functional ontology biological process
Higher in PL (> 45%) C-terminal binding protein 1 Q13363 CTBP1 Differentiation, host-virus interaction, transcription regulation
  Guanine nucleotide binding protein (G protein), alpha 13 Q14344 GNA13 Cellular component movement, platelet activation
  Presenilin associated, rhomboid-like protein Q9H300 PARL -
  Trans-2,3-enoyl-CoA reductase Q9NZ01 GPSN2 Fatty acid biosynthesis, lipid synthesis
  Cas-Br-M (murine) ecotropic retroviral transforming sequence b Q13191 CBLB Ubiquitin conjugation pathway
  Abhydrolase domain containing 16A O95870 BAT5 -
  Tubulin, gamma complex associated protein 3 Q96CW5 TUBGCP3 Microtubule nucleation at the centrosome
  Modulator of apoptosis 1 Q96BY2 MOAP1 Apotosis
  Family with sequence similarity 76, member B Q5HYJ3 FAM76B -
  Thyroid hormone receptor, alpha P10827 THRA Nuclear hormone receptor, transcriptional regulation
  Apolipoprotein A-II P02652 APOA2 Host-virus interaction, lipid transport
  Eyes absent homolog 2 (Drosophila) O00167 EYA2 DNA damage and repair, transcription regulation
  IL-6 receptor P08887 IL6R Regulation of the immune response, acute-phase reactions and hematopoiesis
  G protein-coupled receptor 153 Q6NV75 GPR153 -
  Histone deacetylase 3 O15379 HDAC3 Anti-apoptosis, histone deacetylation, transcriptional regulation
  Actin related protein M1 Q9BYD9 ARPM1 -
  Natural killer cell group 7 sequence Q16617 NKG7 -
  Mitogen-activated protein kinase kinase 7 O14733 MAP2K7 Activation of JUN kinases
  Ubiquitin-conjugating enzyme E2A (RAD6 homolog) P49459 UBE2A DNA damage and repair, ubiquitin conjugation pathway
  v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog P10721 KIT -
  Pleckstrin homology domain containing, family O member 1 Q53GL0 PLEKHO1 Regulation of the actin cytoskeleton
  Adaptor-related protein complex 1, sigma 1 subunit P61966 AP1S1 Endocytosis, protein transport
  neuregulin 1 Q02297 NRG1 Induces growth and differentiation of epithelial, glial, neuronal and skeletal muscle cells
  Peroxisomal biogenesis factor 5 P50542 PEX5 Protein transport
  Nuclear receptor subfamily 6, group A, member 1 Q15406 NR6A1 Transcriptional regulation, cell proliferation
  Serine/threonine kinase 10 O94804 STK10 Serine and threonine phosphorylation
  Eukaryotic translation initiation factor 1 P41567 EIF1 Protein biosynthesis through ribosomal complexes
  Zinc finger protein 36, C3H type-like 2 P47974 ZFP36L2 Cell proliferation, regulates response to growth factors
  Cartilage oligomeric matrix protein P49747 COMP Controls apoptosis and cell adhesion within extracellular matrix
Higher in SF (> 45%) Actinin, alpha 1 A1L0V1 ACTN1 -
Similar levels in PL and SF (< 10%) Protein phosphatase 2, catalytic subunit, beta isozyme P62714 PPP2CB Protein dephosphorylation
  Peroxisomal biogenesis factor 10 O60683 PEX10 Peroxisome biogenesis
  mitogen-activated protein kinase kinase kinase 7 O43318 MAP3K7 Component of a protein kinase signal transduction cascade; Stimulates NF-κB activation and the p38 mitogen-activated protein kinase pathway
  3-Hydroxy-3-methylglutaryl-CoA synthase 1 Q01581 HMGCS1 Cholesterol, steroin and sterol biosynthesis; lipid synthesis
  TNF receptor-associated protein 1 Q12931 TRAP1 Chaperone that expresses an ATPase activity
  Troponin C type 1 (slow) P63316 TNNC1 Regulatory protein of striated muscle contraction
  1. Target antigen list of a select group of autoantibodies that were detected either at similar levels or with at least a 45% difference between synovial fluid (SF) and plasma (PL). The majority of the differentially expressed antibodies are raised in plasma; for example, apolipoprotein AII and cartilage oligomeric matrix protein (COMP) [Uniprot:P02652, Uniprot:P49747]. Only actinin alpha I targeted antibodies were detected at higher levels in SF within the 45% difference threshold [Uniprot:A1L0V1]. Six proteins to which mean antibody levels remained static between fluids have also been listed for comparison. The levels of antibodies against these proteins across individual patient samples are shown in Figure 2A and Figure 3C. STK10, serine/threonine kinase-10.