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Table 1 Association analysis of new variants

From: Identification of low-frequency TRAF3IP2 coding variants in psoriatic arthritis patients and functional characterization

Coding position

Protein position

Position hg19

Allele

871 PsA patients

931 control individuals

P(Fisher Exact)

    

n

%

n

%

 

c.105_106 InsACC

p.Pro35dup

111913185

Ins

2

0.11

3

0.16

1

   

WT

1,740

99.89

1,859

99.84

 

c.281G > A (rs61756667)

p.Ser94Asn

111913009

A

1

0.06

4

0.21

0.376

   

G

1,737

99.94

1,858

99.79

 

c.350C > T

p.Ala117Val

111912940

T

1

0.06

0

0

0.483

   

C

1,737

99.94

1,858

100.00

 

c.649C > A

p.Pro217Thr

111912641

A

18

1.03

10

0.54

0.127

   

C

1,724

98.97

1,852

99.46

 

c.691C > T

p.Leu231Phe

111912599

T

2

0.11

1

0.05

0.613

   

C

1,740

99.89

1,861

99.95

 

c.746A > G

p.Gln249Arg

111912544

G

1

0.06

0

0

0.483

   

A

1,741

99.94

1,862

100.00

 

c.1058G > C

p.Gly353Ala

111896989

C

1

0.06

0

0

0.483

   

G

1,741

99.94

1,862

100.00

 

c.1184A > G

p.Asn395Ser

111896863

G

3

0.17

7

0.38

0.346

   

A

1,739

99.83

1,855

99.62

 
  1. WT, wild type. Names, position on chromosome 6, and count/frequency of wild-type alleles/low-frequency alleles of new variants in PsA patients and control individuals are shown, as well as the P value of Fisher Exact test.