From: The renal urate transporter SLC17A1 locus: confirmation of association with gout
SNP a | Cases | MAF | Controls | MAF | P unadjusted | P adjusted b | OR (95% CI) | HWE case | HWE control | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
rs1165196 | TT | CT | CC | C | TT | CT | CC | C | |||||
Caucasian | 167 (0.400) | 201 (0.482) | 49 (0.118) | 0.359 | 389 (0.318) | 590 (0.482) | 246 (0.200) | 0.442 | 1.0 × 10-4 | 5.5 × 10-5 | 0.71 (0.60 to 0.83) | 0.33 | 0.41 |
EP/N | 130 (0.570) | 86 (0.377) | 12 (0.053) | 0.241 | 98 (0.516) | 77 (0.405) | 15 (0.079) | 0.282 | 0.19 | 0.26 | 0.81 (0.60 to 1.11) | 0.65 | 0.98 |
EP/Z | 16 (0.364) | 22 (0.500) | 6 (0.136) | 0.386 | 53 (0.358) | 64 (0.432) | 31 (0.209) | 0.426 | 0.51 | 0.88 | 0.85 (0.52 to 1.38) | 0.72 | 0.16 |
WP | 138 (0.556) | 99 (0.399) | 11 (0.044) | 0.244 | 69 (0.496) | 54 (0.388) | 16 (0.115) | 0.309 | 0.05 | 0.06 | 0.72 (0.52 to 1.00) | 0.20 | 0.28 |
EP/WP | 10 (0.667) | 5 (0.333) | 0 (0.000) | 0.167 | 6 (0.316) | 10 (0.526) | 3 (0.158) | 0.421 | 0.02 | 0.07 | 0.28 (0.09 to 0.87) | 0.33 | 0.73 |
Combinedc | 5.7 × 10-7 | 0.72 (0.64 to 0.82) | |||||||||||
rs1183201 d | TT | TA | AA | A | TT | TA | AA | A | |||||
Caucasian | 158 (0.384) | 205 (0.499) | 48 (0.117) | 0.366 | 356 (0.291) | 608 (0.496) | 261 (0.213) | 0.461 | 2.0 × 10-6 | 3.0 × 10-6 | 0.67 (0.57 to 0.79) | 0.13 | 0.89 |
EP/N | 130 (0.570) | 86 (0.377) | 12 (0.053) | 0.241 | 96 (0.505) | 78 (0.411) | 16 (0.084) | 0.289 | 0.11 | 0.14 | 0.78 (0.57 to 1.06) | 0.65 | 0.98 |
EP/Z | 15 (0.349) | 21 (0.488) | 7 (0.163) | 0.407 | 52 (0.349) | 61 (0.409) | 36 (0.242) | 0.446 | 0.49 | 0.95 | 0.85 (0.52 to 1.39) | 0.94 | 0.04 |
WP | 132 (0.543) | 101 (0.416) | 10 (0.041) | 0.249 | 68 (0.479) | 57 (0.401) | 17 (0.120) | 0.320 | 0.03 | 0.03 | 0.70 (0.51 to 0.97) | 0.08 | 0.35 |
EP/WP | 9 (0.600) | 6 (0.400) | 0 (0.000) | 0.200 | 7 (0.350) | 10 (0.500) | 3 (0.150) | 0.400 | 0.07 | 0.11 | 0.38 (0.13 to 1.12) | 0.25 | 0.99 |
Combinedc | 3.0 × 10-8 | 0.70 (0.62 to 0.79) | |||||||||||
rs9358890 | AA | AG | GG | G | AA | AG | GG | G | |||||
Caucasian | 366 (0.884) | 47 (0.114) | 1 (0.002) | 0.059 | 1114 (0.912) | 104 (0.085) | 4 (0.003) | 0.046 | 0.12 | 0.17 | 1.31 (0.93 to 1.85) | 0.69 | 0.35 |
EP/N | 97 (0.418) | 99 (0.427) | 36 (0.155) | 0.369 | 80 (0.419) | 78 (0.408) | 33 (0.173) | 0.377 | 0.80 | 0.71 | 0.96 (0.73 to 1.28) | 0.21 | 0.07 |
EP/Z | 34 (0.753) | 11 (0.244) | 0 (0.000) | 0.122 | 129 (0.827) | 26 (0.167) | 1 (0.006) | 0.090 | 0.44 | 0.42 | 1.41 (0.67 to 2.96) | 0.35 | 0.80 |
WP | 110 (0.440) | 101 (0.404) | 39 (0.156) | 0.358 | 73 (0.507) | 61 (0.424) | 10 (0.069) | 0.281 | 0.03 | 0.06 | 1.43 (1.04 to 1.95) | 0.06 | 0.57 |
EP/WP | 8 (0.533) | 7 (0.467) | 0 (0.000) | 0.233 | 12 (0.571) | 7 (0.333) | 2 (0.095) | 0.262 | 0.78 | 0.87 | 0.86 (0.29 to 2.55) | 0.24 | 0.53 |
Combinedc | 0.05 | 1.19 (1.00 to 1.41) | |||||||||||
rs3799344 | CC | CT | TT | T | CC | CT | TT | T | |||||
Caucasian | 165 (0.404) | 193 (0.473) | 50 (0.123) | 0.359 | 379 (0.309) | 592 (0.483) | 255 (0.207) | 0.450 | 5.9 × 10-6 | 2.8 × 10-5 | 0.69 (0.58 to 0.81) | 0.58 | 0.38 |
EP/N | 128 (0.561) | 88 (0.386) | 12 (0.053) | 0.246 | 97 (0.524) | 73 (0.395) | 15 (0.081) | 0.278 | 0.46 | 0.37 | 0.84 (0.62 to 1.15) | 0.53 | 0.80 |
EP/Z | 17 (0.378) | 22 (0.489) | 6 (0.133) | 0.378 | 53 (0.353) | 64 (0.427) | 33 (0.220) | 0.433 | 0.35 | 0.72 | 0.79 (0.49 to 1.29) | 0.79 | 0.49 |
WP | 136 (0.551) | 98 (0.397) | 13 (0.053) | 0.251 | 64 (0.457) | 59 (0.421) | 17 (0.121) | 0.332 | 0.02 | 0.02 | 0.67 (0.49 to 0.93) | 0.39 | 0.55 |
EP/WP | 10 (0.667) | 5 (0.333) | 0 (0.000) | 0.167 | 7 (0.350) | 10 (0.500) | 3 (0.150) | 0.400 | 0.04 | 0.08 | 0.30 (0.10 to 0.95) | 0.44 | 0.85 |
Combinedc | 7.4 × 10-8 | 0.71 (0.62 to 0.80) | |||||||||||
rs12664474 | AA | AG | GG | G | AA | AG | GG | G | |||||
Caucasian | 264 (0.632) | 134 (0.321) | 20 (0.048) | 0.208 | 867 (0.707) | 321 (0.262) | 38 (0.031) | 0.162 | 0.01 | 1.2 × 10-3 | 1.36 (1.12 to 1.66) | 0.57 | 0.22 |
EP/N | 90 (0.383) | 104 (0.443) | 41 (0.174) | 0.396 | 74 (0.392) | 77 (0.407) | 38 (0.201) | 0.405 | 0.79 | 0.17 | 0.96 (0.73 to 1.27) | 0.25 | 0.03 |
EP/Z | 25 (0.543) | 18 (0.391) | 3 (0.065) | 0.261 | 107 (0.704) | 39 (0.257) | 6 (0.039) | 0.168 | 0.05 | 0.13 | 1.75 (1.00 to 3.05) | 0.92 | 0.32 |
WP | 102 (0.411) | 106 (0.427) | 40 (0.161) | 0.375 | 63 (0.444) | 67 (0.472) | 12 (0.085) | 0.320 | 0.13 | 0.10 | 1.27 (0.93 to 1.73) | 0.16 | 0.32 |
EP/WP | 7 (0.467) | 6 (0.400) | 2 (0.133) | 0.333 | 12 (0.571) | 7 (0.333) | 2 (0.095) | 0.262 | 0.51 | 0.38 | 1.41 (0.51 to 3.92) | 0.70 | 0.53 |
Combinedc | 2.0 × 10-3 | 1.25 (1.09 to 1.43) |