Skip to main content

Table 2 Single-nucleotide polymorphisms used to compute the genetic risk score

From: Investigation of Caucasian rheumatoid arthritis susceptibility loci in African patients with the same disease

Chromosome Locus name SNP markers
1 CD2/CD58 rs11586238
1 FCGR2A rs12746613
1 MMEL1/TNFRSF14 rs10910099
1 PTPN22 rs2476601
1 PTPRC rs10919563
2 AFF3 rs10865035
2 CD28 rs1980422
2 CTLA4 rs3087243
2 REL rs13031237
2 STAT4 rs7574865
3 DNASE1L3/PXK rs13315591
4 IL2/IL21 rs6822844
4 RBPJ rs874040
5 GIN1/C5orf30 rs26232
6 CCR6 rs3093023
6 HLA-DRB1 0401 tag rs6910071
6 PRDM1 rs548234
6 TAGAP rs394581
6 TNFAIP3 locus 1 rs6920220
6 TNFAIP3 locus 2 rs13192841
6 TNFAIP3 locus 3 rs5029937
8 BLK rs2736340
9 CCL21 rs2812378
9 TRAF1/C5 rs10760130
10 IL2RA rs2104286
10 PRKCQ rs4750316
12 KIF5A/PIP4K2C rs1678542
20 CD40 rs4810485
22 IL2RB rs3218258
  1. The 28 non-HLA independent rheumatoid arthritis confirmed susceptibility single-nucleotide polymorphisms (SNPs) plus the HLA-DRB1*0401 tag from the meta-analysis by Stahl and colleagues [1] or proxies (in italics in the third colomn) used in the present study are shown here.