Skip to main content

Table 2 Single-nucleotide polymorphisms used to compute the genetic risk score

From: Investigation of Caucasian rheumatoid arthritis susceptibility loci in African patients with the same disease

Chromosome

Locus name

SNP markers

1

CD2/CD58

rs11586238

1

FCGR2A

rs12746613

1

MMEL1/TNFRSF14

rs10910099

1

PTPN22

rs2476601

1

PTPRC

rs10919563

2

AFF3

rs10865035

2

CD28

rs1980422

2

CTLA4

rs3087243

2

REL

rs13031237

2

STAT4

rs7574865

3

DNASE1L3/PXK

rs13315591

4

IL2/IL21

rs6822844

4

RBPJ

rs874040

5

GIN1/C5orf30

rs26232

6

CCR6

rs3093023

6

HLA-DRB1 0401 tag

rs6910071

6

PRDM1

rs548234

6

TAGAP

rs394581

6

TNFAIP3 locus 1

rs6920220

6

TNFAIP3 locus 2

rs13192841

6

TNFAIP3 locus 3

rs5029937

8

BLK

rs2736340

9

CCL21

rs2812378

9

TRAF1/C5

rs10760130

10

IL2RA

rs2104286

10

PRKCQ

rs4750316

12

KIF5A/PIP4K2C

rs1678542

20

CD40

rs4810485

22

IL2RB

rs3218258

  1. The 28 non-HLA independent rheumatoid arthritis confirmed susceptibility single-nucleotide polymorphisms (SNPs) plus the HLA-DRB1*0401 tag from the meta-analysis by Stahl and colleagues [1] or proxies (in italics in the third colomn) used in the present study are shown here.
Back to article page

Arthritis Research & Therapy

ISSN: 1478-6362

Contact us