Identification of rheumatoid arthritis and osteoarthritis patients by transcriptome-based rule set generation

Table 5 Overlap between the three independent study groups

Gene symbol	Probe set name	Expression level	‘Jena’	‘Berlin’	‘Leipzig’	‘Total’
Gene symbol	Probe set name	Expression level	rule rank	rule rank	rule rank	rule rank
‘CG’
NFIL3	203574_at	High	3	4		1
JUND	203752_s_at	High	11	85		18
MAT2A	200768_s_at	High	2	83		5
TIPARP	212665_at	High	12	8
LEPROTL1	202594_at	Low	27	127		113
‘RA’
STAT1	M97935_3_at [200887_s_at]	High	19	1 (& 10)		2 (& 10)
GBP1	202270_at [202269_x_at]	High	2	2 (& 8)		5 (& 6)
PSMB9	204279_at	High	13	17		1
PLCG2	204613_at	High	14	5		4
LY75	205668_at	High	12	26		8
CSF2RB	205159_at	High	17	28	1	3
STK10	40420_at	High	5	21		12

The genes belonging to at least one of the pruned rule sets of the three independent study groups are highlighted in bold, genes/rules detected by two different probe sets are indicated by numbers in parentheses.

ISSN: 1478-6362