Chr | Location range (base pairs, hg18) | Best SNP | MAF cases | MAF controls | Immunochip OR | ImmunochipPvalue | Replication OR | ReplicationPvalue | Combined analysis | Gene annotation# |
---|---|---|---|---|---|---|---|---|---|---|
6 | 32,039,116-32,888,448 | rs2857130 | 0.293 | 0.389 | 0.68 | 2.8 × 10−7 | 0.81 | 0.003 | 1.3 × 10−8 | Intergenic (HLA region) |
1 | 101,009,225 | Novel SNP | 0.024 | 0.008 | 3.31 | 1.8 × 10−6 | 2.49 | 0.031 | 1.9 × 10−7 | Intergenic (VCAM1) |
3 | 58,158,676-58,289,303 | rs35677470 | 0.122 | 0.083 | 1.63 | 3.4 × 10−6 | 1.27 | 0.027 | 1.2 × 10−6 | DNASE1L3 (coding) |
3 | 58,158,676-58,289,303 | rs35677470 | 0.174 | 0.083 | 2.36 | 2.3 × 10−10 | 1.74 | 3.0 × 10−4 | 8.71 × 10−13 | DNASE1L3 (coding)^ |
7 | 128,372,852-128,499,110 | rs34381587 | 0.158 | 0.113 | 1.53 | 1.2 × 10−5 | 1.38 | 8.7 × 10−4 | 5.2 × 10−8 | IRF5/TNPO3 (intron) |
16 | 73,863,956-74,046,823 | rs11149824 | 0.469 | 0.391 | 1.35 | 1.4 × 10−5 | 1.054 | 0.442 | 3.2 × 10−4 | CFDP1 (intron) |
2 | 43,775,459-43,784,213 | rs13403030 | 0.384 | 0.318 | 1.36 | 1.5 × 10−5 | 0.92 | 0.242 | 0.027 | PLEKHH2 (intron) |
2 | 191,608,694-191,641,499 | rs13426947 | 0.253 | 0.191 | 1.42 | 1.8 × 10−5 | 1.25 | 5.4 × 10−3 | 6.1 × 10−7 | STAT4 (intron) |
1 | 61,883,642 | rs2886326 | 0.249 | 0.195 | 1.41 | 2.0 × 10−5 | 0.96 | 0.606 | 7.4 × 10−3 | Intergenic (TM2D1) |