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Table 1 Oligonucleotide primers used in cDNA synthesis for the detection of miR-33a and U6 (stem-loop primers) and for real-time quantitative PCR assay a

From: MicroRNA-33a regulates cholesterol synthesis and cholesterol efflux-related genes in osteoarthritic chondrocytes

 

RT-qPCR stem-loop primer

miR-33a

5′-TGGATATCCACACCAGGGTCCGAGGTATTCGGTGTGGATATCCATGCAATG

U6

5′-CACGGAAGCCCTCACACCGTGTCGTTC

Gene

Forward primer sequence

Reverse primer sequence

miR-33a

CGCGCGTGCATTGTAGTTG

CACCAGGGTCCGAGGT

U6

GCTTCGGCAGCACATATACTAAAAT

CTCACACCGTGTCGTTCCA

SREBP2

AAGTCTGGCGTTCTGAGGAA

AGGTCCACCTCATTGTCCAC

ABCA1

GGAGGCAATGGCACTGAGGAA

CCTGCCTTGTGGCTGGAGTGT

ApoA1

ATGAAAGCTGCGGTGCTGACC

CACCTTCTGGCGGTAGAGCTCC

LXRα

CCGCCTGAAGAAACTGAA

CGAAGCCGGTCAGAAAAG

LXRβ

CGCTACAACCACGAGACAGA

GTGGAAGTCGTCCTTGCTGT

MMP-13

TGGCATTGCTGACATCATGA

GCCAGAGGGCCCATCAA

Smad7

TCCAGATACCCGATGGATTTTC

GATTTTGCTCCGCACCTTCT

GAPDH

GAGTCAACGGATTTGGTCGT

GACAAGCTTCCCGTTCTCAG

  1. aABCA1, ATP-binding cassette transporter A1; ApoA1, Apolipoprotein A1; GAPDH, Glyceraldehyde 3-phosphate dehydrogenase; LXR, Liver X receptor; miR-33a, MicroRNA-33a mature; MMP-13, Matrix metalloproteinase-13; SREBP2, Sterol regulatory element-binding protein 2.