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Table 3 Gene modules resulting from the combination of Gene Ontology, gene-gene interaction, and pathway analysis

From: CD4 T-cell transcriptome analysis reveals aberrant regulation of STAT3 and Wnt signaling pathways in rheumatoid arthritis: evidence from a case–control study

Probe set ID Gene symbol Fold change Q value
229010_at CBL 2.22 0
212435_at TRIM33 0.61 0
226294_x_at FAM91A1 0.33 0
227817_at PRKCB 2.26 6.101 × 10−16
227073_at MAP3K2 0.50 1.296 × 10−14
214578_s_at ROCK1 2.99 4.303 × 10−12
212073_at CSNK2A1 0.32 5.813 × 10−8
1555613_a_at ZAP70 0.59 6.82 × 10−6
223300_s_at CCDC82 0.51 6.82 × 10−6
212366_at ZNF292 0.59 2.31 × 10−5
214917_at PRKAA1 0.57 7.15 × 10−5
212249_at PIK3R1 0.58 0.000141
231777_at CSNK2B 3.90 0.00076
37152_at PPARD 0.44 0.000927
231798_at NOG 1.62 0.00133
225661_at IFNAR1 2.16 0.002
235980_at PIK3CA 1.70 0.00264
206359_at SOCS3 0.62 0.00336
226660_at RPS6KB1 0.61 0.0101
212764_at ZEB1 1.83 0.0125
1553725_s_at ZNF644 0.59 0.0187
203542_s_at KLF9 0.61 0.0238
211930_at HNRNPA3 0.64 0.0344