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Table 3 Association studies of investigated genotypes in comparison of ATA- or ACA-positive SSc patients to controls in the discovery cohort

From: Genetic susceptibility loci of idiopathic interstitial pneumonia do not represent risk for systemic sclerosis: a case control study in Caucasian patients

  

ATA (+)

ACA (+)

SNP

Gene

OR (95 % CI)

p value

OR (95 % CI)

p value

rs2736100*

TERT

1.01 (0.84; 1.22)

0.881

1.14 (0.99; 1.31)

0.069

rs2076295*

DSP

1.01 (0.83; 1.21)

0.945

0.94 (0.82; 1.09)

0.423

rs4727443*

AZGP1

1.12 (0.93; 1.36)

0.226

0.96 (0.83; 1.11)

0.609

rs7934606*

MUC2

1.00 (0.83; 1.20)

0.992

1.07 (0.93; 1.23)

0.925

rs2034650*

IVD

0.99 (0.82; 1.19)

0.915

1.04 (0.90; 1.20)

0.584

rs1981997*

MAPT

0.92 (0.73; 1.16)

0.495

1.15 (0.97; 1.36)

0.100

rs12610495*

DPP9

0.98 (0.80; 1.20)

0.847

1.05 (0.90; 1.22)

0.572

rs6793295*

LRRC34

1.15 (0.94; 1.42)

0.172

1.15 (0.98; 1.35)

0.080

rs2609255*

FAMI3A

1.04 (0.83; 1.30)

0.736

1.00 (0.84; 1.19)

1.000

rs11191865 *

OBFC1

1.21 (1.00; 1.45)

0.048

0.99 (0.86; 1.14)

0.898

rs1278769*

ATP11A

1.09 (0.89; 1.35)

0.394

0.96 (0.81; 1.14)

0.650

rs1379326†

CSMD1

0.78 (0.46; 1.31)

0.340

0.94 (0.65; 1.36)

0.736

rs17690703

SPPL2C

0.97 (0.76; 1.26)

0.870

1.14 (0.94; 1.38)

0.184

  1. Gene names: TERT: telomerase reverse transcriptase; DSP: desmoplakin; AZGP1: alpha-2-glycoprotein 1, zinc-binding; MUC2: mucin 2; IVD: isovaleryl-CoA dehydrogenase; MAPT: microtubule-associated protein tau; DPP9: dipeptidyl-peptidase 9; LRRC34: leucine-rich repeat-containing 34; FAMI3A: family with sequence similarity 13, member A; OBFC1: oligonucleotide/oligosaccharide-binding fold containing 1; ATP11A: ATPase, class VI, type 11A; CSMD1: CUB and Sushi multiple domains 1; SPPL2C: signal peptide peptidase-like 2C
  2. ATA anti-topoisomerase 1 antibody, ACA anti-centromere antibody, SSc systemic sclerosis, SNP single nucleotide polymorphism
  3. *Additive model;,†Recessive model