Table 1 Histone marks in the SNP linkage disequilibrium blocks in neutrophils
From: Chromatin landscapes and genetic risk in systemic lupus
GWAS index SNP | Chr | Linkage disequilibrium blocks | Number of H3K27ac marks | Number of H3K4me1 marks | Enhancer marks (yes/no) |
|---|---|---|---|---|---|
rs10028805 | 4 | 102736456–102762581 | 0 | 0 | No |
rs10036748 | 5 | 150457485–150461049 | 55 | 388 | Yes |
rs10488631 | 7 | 128585616–128711874 | 104 | 468 | Yes |
rs1059312 | 12 | 129277164–129288534 | 44 | 84 | Yes |
rs10774625 | 12 | 111884608–112007756 | 178 | 368 | Yes |
rs10807150 | 6 | 35154315–35278796 | 160 | 263 | Yes |
rs10936599 | 3 | 169477506–169528523 | 41 | 58 | Yes |
rs11644034 | 16 | 85967285–85980534 | 0 | 24 | Yes |
rs11889341 | 2 | 191943742–191970120 | 0 | 0 | No |
rs12022418 | 1 | 192521591–192535107 | 17 | 45 | Yes |
rs1270942 | 6 | 31704294–32175415 | 126 | 0 | Yes |
rs12802200 | 11 | 566936–567627 | 0 | 39 | Yes |
rs1610555 | 18 | 67523453–67544046 | 0 | 0 | No |
rs1801274 | 1 | 161470042–161479745 | 36 | 317 | Yes |
rs1885889 | 13 | 100084234–100104106 | 25 | 53 | Yes |
rs2009453 | 11 | 65399528–65405300 | 78 | 237 | Yes |
rs223881 | 16 | 57386566–57317134 | 0 | 0 | No |
rs2286672 | 17 | 4706123–4712617 | 0 | 3 | Yes |
rs2289583 | 15 | 75285114–75370012 | 227 | 386 | Yes |
rs2305772 | 19 | 52021247–52034940 | 0 | 0 | No |
rs2421184 | 5 | 158884119–158886939 | 0 | 0 | No |
rs2431697 | 5 | 159879978–159883217 | 0 | 0 | No |
rs2476601 | 1 | 114303808–114377568 | 113 | 297 | Yes |
rs2663052 | 10 | 50045456–50081232 | 0 | 0 | No |
rs2732549 | 11 | 35073852–35098193 | 26 | 106 | Yes |
rs2736340 | 8 | 11337587–11353000 | 0 | 0 | No |
rs2941509 | 17 | 37885383–38077485 | 308 | 693 | Yes |
rs3024505 | 1 | 206939904–206943968 | 0 | 66 | Yes |
rs34572943 | 16 | 31272353–31276811 | 79 | 150 | Yes |
rs3768792 | 2 | 213871709–213890232 | 0 | 0 | No |
rs3794060 | 11 | 71138710–71203790 | 62 | 125 | Yes |
rs4917014 | 7 | 50278187–50308811 | 66 | 65 | Yes |
rs4948496 | 10 | 63803472–63819903 | 67 | 83 | Yes |
rs61616683 | 22 | 39747050–39756650 | 0 | 22 | Yes |
rs6568431 | 6 | 106574794–106597639 | 15 | 15 | Yes |
rs6740462 | 2 | 65654364–65667272 | 26 | 35 | Yes |
rs6932056 | 6 | 138132123–138243700 | 175 | 286 | Yes |
rs740840 | 12 | 6327008–63600683 | 38 | 86 | Yes |
rs7444 | 22 | 21920817–21983260 | 153 | 420 | Yes |
rs7556469 | 1 | 198607998–198637582 | 379 | 487 | Yes |
rs7726414 | 5 | 133232663–13877357 | 252 | 1090 | Yes |
rs7941765 | 11 | 128499000–128500215 | 59 | 99 | Yes |
rs849142 | 7 | 28162674–28200097 | 17 | 222 | Yes |
rs9462027 | 6 | 34563164–34828553 | 167 | 717 | Yes |
rs9652601 | 16 | 11164567–11207894 | 63 | 105 | Yes |
rs9782955 | 1 | 235907825–236041129 | 322 | 511 | Yes |