From: Interaction of the GCKR and A1CF loci with alcohol consumption to influence the risk of gout
SNP (% genotype data)a | Gene value | Effect allele | NZ European (n = 1039) | NZ Polynesian (n = 1753) | ||
---|---|---|---|---|---|---|
Interaction term (SE) | P value | Interaction term (SE) | P value | |||
Alcohol intake as a continuous variable (per 50 g/week) | ||||||
rs10821905 (99.2) | A1CF | A | 0.85 (0.07) | 0.026 | 1.09 (0.08) | 0.28 |
rs2231142 (99.7) | ABCG2 | T | 0.99 (0.07) | 0.89 | 0.92 (0.05) | 0.19 |
rs7976059 (98.9) | ACVR1B/ACVRL1 | T | 0.95 (0.07) | 0.44 | 0.94 (0.07) | 0.33 |
rs653178 (99.3) | ATXN2 | G | 1.11 (0.07) | 0.15 | 1.07 (0.09) | 0.44 |
rs11983997 (97.8) | MLXIPL/BAZ1B | G | 0.60 (0.22) | 0.022 | – | – |
rs780094 (98.9) | GCKR | T | 0.76 (0.08) | 4.8 × 10−4 | 0.95 (0.06) | 0.33 |
rs7224610 (99.2) | HLF | C | 0.97 (0.07) | 0.68 | 1.04 (0.06) | 0.59 |
rs2941484 (98.9) | HNF4G | T | 0.98 (0.07) | 0.78 | 1.03 (0.06) | 0.64 |
rs6598541 (99.0) | IGF1R | A | 0.92 (0.08) | 0.31 | 1.08 (0.16) | 0.61 |
rs17050272 (99.0) | INHBB | A | 0.99 (0.07) | 0.96 | 0.98 (0.09) | 0.78 |
rs1106766 (98.5) | INHBC | C | 0.90 (0.48) | 0.83 | 1.04 (0.17) | 0.84 |
rs7188445 (98.8) | MAF | G | 1.14 (0.14) | 0.33 | 0.99 (0.08) | 0.98 |
rs7193778 (98.8) | NFAT5 | C | 0.92 (0.08) | 0.30 | 1.12 (0.07) | 0.12 |
rs1394125 (98.6) | UBE2Q2 | A | 1.13 (0.07) | 0.086 | 0.77 (0.12) | 0.024 |
rs1967017 (99.0) | PDZK1 | T | 0.98 (0.08) | 0.85 | 1.01 (0.10) | 0.90 |
rs10480300 (98.0) | PRKAG2 | T | 0.95 (0.07) | 0.45 | 1.17 (0.11) | 0.16 |
rs675209 (99.2) | RREB1 | T | 0.83 (0.07) | 0.007 | 1.08 (0.15) | 0.61 |
rs6770152 (98.8) | SFMBT1 | G | 0.98 (0.07) | 0.81 | 0.97 (0.07) | 0.72 |
rs1183201 (99.5) | SLC17A1 | T | 0.96 (0.10) | 0.73 | 1.01 (0.10) | 0.91 |
rs2078267 (99.7) | SLC22A11 | G | 0.98 (0.08) | 0.86 | 1.00 (0.22) | 1.00 |
rs3825018 (99.7) | SLC22A12 | G | 0.89 (0.06) | 0.11 | 1.05 (0.11) | 0.67 |
rs12356193 (98.3) | SLC16A9 | A | 1.07 (0.29) | 0.81 | – | – |
rs11942223 (99.9) | SLC2A9 | T | 0.96 (0.21) | 0.85 | 0.52 (2.74) | 0.81 |
rs17786744 (99.0) | STC1 | G | 1.08 (0.07) | 0.29 | 1.11 (0.06) | 0.055 |
rs7953704 (99.2) | B3GNT4 | G | 0.99 (0.09) | 0.90 | 1.04 (0.07) | 0.52 |
rs17632159 (98.6) | TMEM171 | G | 1.25 (0.14) | 0.10 | 0.86 (0.11) | 0.16 |
rs11264341 (99.1) | TRIM46 | C | 1.01 (0.09) | 0.95 | 1.03 (0.06) | 0.63 |
rs729761 (99.1) | VEGFA | G | 1.11 (0.14) | 0.46 | 0.99 (0.10) | 0.98 |
rs2544390 (79.4) | LRP2 | T | 0.92 (0.09) | 0.34 | 0.72 (0.11) | 0.004 |
Alcohol intake as a categorical variable (none vs. any intake) | ||||||
rs10821905 (99.2) | A1CF | A | 0.29 (0.10) 0.28 (0.10)b 0.29 (0.11)c | 1.4 × 10−4 6.3 × 10−4 1.0 × 10−3 | 1.27 (0.36) | 0.40 |
rs2231142 (99.7) | ABCG2 | T | 1.05 (0.38) | 0.88 | 0.91 (0.23) | 0.71 |
rs7976059 (98.9) | ACVR1B/ACVRL1 | T | 0.75 (0.24) | 0.38 | 0.72 (0.19) | 0.22 |
rs653178 (99.3) | ATXN2 | G | 1.90 (0.70) | 0.082 | 0.91 (0.79) | 0.79 |
rs11983997 (97.8) | MLXIPL/BAZ1B | G | 0.19 (0.19) | 0.093 | – | – |
rs780094 (98.9) | GCKR | T | 0.28 (0.09) 0.22 (0.08)b 0.23 (0.09)c | 1.5 × 10−4 5.8 × 10−58.5 × 10−5 | 0.62 (0.15) 0.54 (0.14) 0.53 (0.14) | 0.05 0.02 0.02 |
rs7224610 (99.2) | HLF | C | 0.77 (0.25) | 0.43 | 1.26 (0.34) | 0.38 |
rs2941484 (98.9) | HNF4G | T | 1.79 (0.62) | 0.092 | 1.36 (0.21) | 0.21 |
rs6598541 (99.0) | IGF1R | A | 1.21 (0.40) | 0.57 | 1.32 (0.84) | 0.66 |
rs17050272 (99.0) | INHBB | A | 0.49 (0.16) | 0.033 | 1.32 (0.46) | 0.43 |
rs1106766 (98.5) | INHBC | C | 0.52 (0.36) | 0.35 | 1.54 (0.86) | 0.86 |
rs7188445 (98.8) | MAF | G | 1.92 (1.07) | 0.24 | 0.98 (0.32) | 0.95 |
rs7193778 (98.8) | NFAT5 | C | 0.63 (0.23) | 0.20 | 1.11 (0.31) | 0.70 |
rs1394125 (98.6) | UBE2Q2 | A | 2.38 (0.79) | 0.009 | 0.63 (0.22) | 0.18 |
rs1967017 (99.0) | PDZK1 | T | 0.83 (0.30) | 0.60 | 1.26 (0.48) | 0.54 |
rs10480300 (98.0) | PRKAG2 | T | 1.07 (0.34) | 0.83 | 1.01 (0.42) | 0.97 |
rs675209 (99.2) | RREB1 | T | 0.68 (0.22) | 0.23 | 1.33 (0.75) | 0.61 |
rs6770152 (98.8) | SFMBT1 | G | 1.26 (0.44) | 0.51 | 1.07 (0.32) | 0.82 |
rs1183201 (99.5) | SLC17A1 | T | 0.53 (0.22) | 0.12 | 1.80 (0.83) | 0.20 |
rs2078267 (99.7) | SLC22A11 | G | 1.20 (0.42) | 0.60 | 0.60 (0.55) | 0.58 |
rs3825018 (99.7) | SLC22A12 | G | 1.27 (0.40) | 0.45 | 1.00 (0.41) | 0.99 |
rs12356193 (98.3) | SLC16A9 | A | 1.03 (0.99) | 0.97 | – | – |
rs11942223 (99.9) | SLC2A9 | T | 0.83 (0.71) | 0.82 | 1.12 (2.96) | 0.97 |
rs17786744 (99.0) | STC1 | G | 1.00 (0.34) | 0.99 | 1.72 (0.43) | 0.03 |
rs7953704 (99.2) | B3GNT4 | G | 1.28 (0.52) | 0.54 | 0.68 (0.24) | 0.27 |
rs17632159 (98.6) | TMEM171 | G | 1.71 (1.02) | 0.37 | 0.38 (0.16) | 0.022 |
rs11264341 (99.1) | TRIM46 | C | 1.45 (0.59) | 0.36 | 1.07 (0.27) | 0.80 |
rs729761 (99.1) | VEGFA | G | 1.81 (0.97) | 0.26 | 0.99 (0.41) | 0.97 |
rs2544390 (79.4) | LRP2 | T | 0.86 (0.34) | 0.71 | 0.32 (0.12) | 0.003 |