TY - JOUR AU - Kraus, V. B. AU - Blanco, F. J. AU - Englund, M. AU - Henrotin, Y. AU - Lohmander, L. S. AU - Losina, E. PY - 2015 DA - 2015// TI - OARSI Clinical Trials Recommendations: soluble biomarker assessments in clinical trials in osteoarthritis JO - Osteoarthritis Cartilage VL - 23 UR - https://doi.org/10.1016/j.joca.2015.03.002 DO - 10.1016/j.joca.2015.03.002 ID - Kraus2015 ER - TY - STD TI - National Institute for Health and Care Excellence (NICE). Autologous chondrocyte implantation for treating symptomatic articular cartilage defects of the knee. Technology appraisal guidance [TA477]. 4 Oct 2017. https://www.nice.org.uk/guidance/ta477/resources/autologous-chondrocyte-implantation-for-treating-symptomatic-articular-cartilage-defects-of-the-knee-pdf-82604971061701. Accessed 25 Nov 2017. UR - https://www.nice.org.uk/guidance/ta477/resources/autologous-chondrocyte-implantation-for-treating-symptomatic-articular-cartilage-defects-of-the-knee-pdf-82604971061701 ID - ref2 ER - TY - JOUR AU - Hulme, C. H. AU - Wilson, E. L. AU - Peffers, M. J. AU - Roberts, S. AU - Simpson, D. M. AU - Richardson, J. B. PY - 2017 DA - 2017// TI - Autologous chondrocyte implantation-derived synovial fluids display distinct responder and non-responder profiles JO - Arthritis Res Ther. VL - 19 UR - https://doi.org/10.1186/s13075-017-1336-7 DO - 10.1186/s13075-017-1336-7 ID - Hulme2017 ER - TY - JOUR AU - Gillogly, S. D. AU - Voight, M. AU - Blackburn, T. PY - 1998 DA - 1998// TI - Treatment of articular cartilage defects of the knee with autologous chondrocyte implantation JO - J Orthop Sport Phys Ther VL - 28 UR - https://doi.org/10.2519/jospt.1998.28.4.241 DO - 10.2519/jospt.1998.28.4.241 ID - Gillogly1998 ER - TY - JOUR AU - Richardson, J. B. AU - Caterson, B. AU - Evans, E. H. AU - Ashton, B. A. AU - Roberts, S. PY - 1999 DA - 1999// TI - Repair of human articular cartilage after implantation of autologous chondrocytes JO - J Bone Joint Surg Br VL - 81 UR - https://doi.org/10.1302/0301-620X.81B6.9343 DO - 10.1302/0301-620X.81B6.9343 ID - Richardson1999 ER - TY - JOUR AU - Wright, K. T. AU - Mennan, C. AU - Fox, H. AU - Richardson, J. B. AU - Banerjee, R. AU - Roberts, S. PY - 2013 DA - 2013// TI - Characterization of the cells in repair tissue following autologous chondrocyte implantation in mankind: a novel report of two cases JO - Regen Med VL - 8 UR - https://doi.org/10.2217/rme.13.67 DO - 10.2217/rme.13.67 ID - Wright2013 ER - TY - JOUR AU - Bhosale, A. M. AU - Kuiper, J. H. AU - Johnson, W. E. AU - Harrison, P. E. AU - Richardson, J. B. PY - 2009 DA - 2009// TI - Midterm to long-term longitudinal outcome of autologous chondrocyte implantation in the knee joint: a multilevel analysis JO - Am J Sports Med VL - 37 UR - https://doi.org/10.1177/0363546509350555 DO - 10.1177/0363546509350555 ID - Bhosale2009 ER - TY - JOUR AU - Wright, K. T. AU - Kuiper, J. H. AU - Richardson, J. B. AU - Gallacher, P. AU - Roberts, S. PY - 2017 DA - 2017// TI - The absence of detectable ADAMTS-4 (aggrecanase-1) activity in synovial fluid is a predictive indicator of autologous chondrocyte implantation success JO - Am J Sports Med VL - 45 UR - https://doi.org/10.1177/0363546517694027 DO - 10.1177/0363546517694027 ID - Wright2017 ER - TY - JOUR AU - Dugard, M. N. AU - Kuiper, J. H. AU - Parker, J. AU - Roberts, S. AU - Robinson, E. AU - Harrison, P. PY - 2017 DA - 2017// TI - Development of a tool to predict outcome of autologous chondrocyte implantation JO - Cartilage VL - 8 UR - https://doi.org/10.1177/1947603516650002 DO - 10.1177/1947603516650002 ID - Dugard2017 ER - TY - JOUR AU - Hsueh, M. F. AU - Önnerfjord, P. AU - Kraus, V. B. PY - 2014 DA - 2014// TI - Biomarkers and proteomic analysis of osteoarthritis JO - Matrix Biol VL - 39 UR - https://doi.org/10.1016/j.matbio.2014.08.012 DO - 10.1016/j.matbio.2014.08.012 ID - Hsueh2014 ER - TY - JOUR AU - Chiaradia, E. AU - Pepe, M. AU - Tartaglia, M. AU - Scoppetta, F. AU - D’Ambrosio, C. AU - Renzone, G. PY - 2012 DA - 2012// TI - Gambling on putative biomarkers of osteoarthritis and osteochondrosis by equine synovial fluid proteomics JO - J Proteomics VL - 75 UR - https://doi.org/10.1016/j.jprot.2012.02.008 DO - 10.1016/j.jprot.2012.02.008 ID - Chiaradia2012 ER - TY - JOUR AU - Pan, X. AU - Huang, L. AU - Chen, J. AU - Dai, Y. AU - Chen, X. PY - 2012 DA - 2012// TI - Analysis of synovial fluid in knee joint of osteoarthritis: 5 proteome patterns of joint inflammation based on matrix-assisted laser desorption/ionization time-of-flight mass spectrometry JO - Int Orthop VL - 36 UR - https://doi.org/10.1007/s00264-011-1258-y DO - 10.1007/s00264-011-1258-y ID - Pan2012 ER - TY - JOUR AU - Sohn, D. H. AU - Sokolove, J. AU - Sharpe, O. AU - Erhart, J. C. AU - Chandra, P. E. AU - Lahey, L. J. PY - 2012 DA - 2012// TI - Plasma proteins present in osteoarthritic synovial fluid can stimulate production via Toll-like receptor 4 JO - Arthritis Res Ther VL - 14 UR - https://doi.org/10.1186/ar3555 DO - 10.1186/ar3555 ID - Sohn2012 ER - TY - JOUR AU - Liao, W. AU - Li, Z. AU - Wang, H. AU - Wang, J. AU - Fu, Y. AU - Bai, X. PY - 2013 DA - 2013// TI - Proteomic analysis of synovial fluid: insight into the pathogenesis of knee osteoarthritis JO - Int Orthop VL - 37 UR - https://doi.org/10.1007/s00264-012-1768-2 DO - 10.1007/s00264-012-1768-2 ID - Liao2013 ER - TY - JOUR AU - Noh, R. AU - Park, S. G. AU - Ju, J. H. AU - Chi, S. W. AU - Kim, S. AU - Lee, C. K. PY - 2014 DA - 2014// TI - Comparative proteomic analyses of synovial fluids and serums from rheumatoid arthritis patients JO - J Microbiol Biotechnol VL - 24 UR - https://doi.org/10.4014/jmb.1307.07046 DO - 10.4014/jmb.1307.07046 ID - Noh2014 ER - TY - JOUR AU - Liao, W. AU - Li, Z. AU - Zhang, H. AU - Li, J. AU - Wang, K. AU - Yang, Y. PY - 2015 DA - 2015// TI - Proteomic analysis of synovial fluid as an analytical tool to detect candidate biomarkers for knee osteoarthritis JO - Int J Clin Exp Pathol VL - 8 ID - Liao2015 ER - TY - JOUR AU - Mateos, J. AU - Lourido, L. AU - Fernández-Puente, P. AU - Calamia, V. AU - Fernández-López, C. AU - Oreiro, N. AU - Ruiz-Romero, C. AU - Blanco, F. J. PY - 2012 DA - 2012// TI - Differential protein profiling of synovial fluid from rheumatoid arthritis and osteoarthritis patients using LC–MALDI TOF/TOF JO - J Proteomics VL - 75 UR - https://doi.org/10.1016/j.jprot.2011.12.042 DO - 10.1016/j.jprot.2011.12.042 ID - Mateos2012 ER - TY - JOUR AU - Ritter, S. Y. AU - Subbaiah, R. AU - Bebek, G. AU - Crish, J. AU - Scanzello, C. R. AU - Krastins, B. PY - 2013 DA - 2013// TI - Proteomic analysis of synovial fluid from the osteoarthritic knee: comparison with transcriptome analyses of joint tissues JO - Arthritis Rheum VL - 65 UR - https://doi.org/10.1002/art.37823 DO - 10.1002/art.37823 ID - Ritter2013 ER - TY - JOUR AU - Balakrishnan, L. AU - Nirujogi, R. S. AU - Ahmad, S. AU - Bhattacharjee, M. AU - Manda, S. S. AU - Renuse, S. PY - 2014 DA - 2014// TI - Proteomic analysis of human osteoarthritis synovial fluid JO - Clin Proteomics VL - 11 UR - https://doi.org/10.1186/1559-0275-11-6 DO - 10.1186/1559-0275-11-6 ID - Balakrishnan2014 ER - TY - JOUR AU - Balakrishnan, L. AU - Bhattacharjee, M. AU - Ahmad, S. AU - Nirujogi, R. S. AU - Renuse, S. AU - Subbannayya, Y. PY - 2014 DA - 2014// TI - Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients JO - Clin Proteomics VL - 11 UR - https://doi.org/10.1186/1559-0275-11-1 DO - 10.1186/1559-0275-11-1 ID - Balakrishnan2014 ER - TY - JOUR AU - Bennike, T. AU - Ayturk, U. AU - Haslauer, C. M. AU - Froehlich, J. W. AU - Proffen, B. L. AU - Barnaby, O. PY - 2014 DA - 2014// TI - A normative study of the synovial fluid proteome from healthy porcine knee joints JO - J Proteome Res VL - 13 UR - https://doi.org/10.1021/pr500587x DO - 10.1021/pr500587x ID - Bennike2014 ER - TY - JOUR AU - Bhattacharjee, M. AU - Balakrishnan, L. AU - Renuse, S. AU - Advani, J. AU - Goel, R. AU - Sathe, G. PY - 2016 DA - 2016// TI - Synovial fluid proteome in rheumatoid arthritis JO - Clin Proteomics VL - 13 UR - https://doi.org/10.1186/s12014-016-9113-1 DO - 10.1186/s12014-016-9113-1 ID - Bhattacharjee2016 ER - TY - JOUR AU - Wu, W. W. AU - Wang, G. AU - Baek, S. J. AU - Shen, R. F. PY - 2006 DA - 2006// TI - Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF JO - J Proteome Res VL - 5 UR - https://doi.org/10.1021/pr050405o DO - 10.1021/pr050405o ID - Wu2006 ER - TY - JOUR AU - Bantscheff, M. AU - Schirle, M. AU - Sweetman, G. AU - Rick, J. AU - Kuster, B. PY - 2007 DA - 2007// TI - Quantitative mass spectrometry in proteomics: a critical review JO - Anal Bioanal Chem VL - 389 UR - https://doi.org/10.1007/s00216-007-1486-6 DO - 10.1007/s00216-007-1486-6 ID - Bantscheff2007 ER - TY - JOUR AU - Lilley, K. S. AU - Beynon, R. J. AU - Eyers, C. E. AU - Hubbard, S. J. PY - 2015 DA - 2015// TI - Focus of quantitative proteomics JO - Proteomics VL - 15 UR - https://doi.org/10.1002/pmic.201570163 DO - 10.1002/pmic.201570163 ID - Lilley2015 ER - TY - JOUR AU - Herr, M. M. AU - Fries, K. M. AU - Upton, L. G. AU - Edsberg, L. E. PY - 2011 DA - 2011// TI - Potential biomarkers of temporomandibular joint disorders JO - J Oral Maxillofac Surg VL - 69 UR - https://doi.org/10.1016/j.joms.2010.05.013 DO - 10.1016/j.joms.2010.05.013 ID - Herr2011 ER - TY - JOUR AU - Roberts, S. AU - Evans, H. AU - Wright, K. AU - van Niekerk, L. AU - Caterson, B. AU - Richardson, J. B. PY - 2015 DA - 2015// TI - ADAMTS-4 activity in synovial fluid as a biomarker of inflammation and effusion JO - Osteoarthritis Cartilage. VL - 23 UR - https://doi.org/10.1016/j.joca.2015.05.006 DO - 10.1016/j.joca.2015.05.006 ID - Roberts2015 ER - TY - JOUR AU - Kraus, V. B. AU - Stabler, T. V. AU - Kong, S. Y. AU - Varju, G. AU - McDaniel, G. PY - 2007 DA - 2007// TI - Measurement of synovial fluid volume using urea JO - Osteoarthritis Cartilage VL - 15 UR - https://doi.org/10.1016/j.joca.2007.03.017 DO - 10.1016/j.joca.2007.03.017 ID - Kraus2007 ER - TY - JOUR AU - Ehrich, E. AU - Davies, G. AU - Watson, D. AU - Bolohnese, J. AU - Seidenberg, B. AU - Bellamy, N. PY - 2000 DA - 2000// TI - Minimal perceptible clinical improvement with the Western Ontario and McMaster Universities Osteoarthritis Index questionnaire and global assessments in patients with osteoarthritis JO - J Rheumatol VL - 27 ID - Ehrich2000 ER - TY - JOUR AU - Roos, E. AU - Lohmander, L. PY - 2003 DA - 2003// TI - The Knee Injury and Osteoarthritis Outcome Score (KOOS): from joint injury to osteoarthritis JO - Health Qual Life Outcomes VL - 1 UR - https://doi.org/10.1186/1477-7525-1-64 DO - 10.1186/1477-7525-1-64 ID - Roos2003 ER - TY - JOUR AU - Saris, D. AU - Vanlauwe, J. AU - Victor, J. AU - Almqvist, K. AU - Verdonk, R. AU - Bellemans, J. PY - 2009 DA - 2009// TI - Treatment of symptomatic cartilage defects in the knee: characterized chondrocyte implantation results in better clinical outcome at 36 months in a randomized trial compared to microfracture JO - Am J Sports Med VL - 37 UR - https://doi.org/10.1177/0363546509350694 DO - 10.1177/0363546509350694 ID - Saris2009 ER - TY - JOUR AU - Smith, H. J. AU - Richardson, J. B. AU - Tennant, A. PY - 2009 DA - 2009// TI - Modification and validation of the Lysholm Knee Scale to assess articular cartilage damage JO - Osteoarthritis Cartilage. VL - 17 UR - https://doi.org/10.1016/j.joca.2008.05.002 DO - 10.1016/j.joca.2008.05.002 ID - Smith2009 ER - TY - JOUR AU - Lysholm, J. AU - Gillquist, J. PY - 1982 DA - 1982// TI - Evaluation of knee ligament surgery results with special emphasis on use of a scoring scale JO - Am J Sports Med VL - 10 UR - https://doi.org/10.1177/036354658201000306 DO - 10.1177/036354658201000306 ID - Lysholm1982 ER - TY - JOUR AU - Stoscheck, C. M. PY - 1987 DA - 1987// TI - Protein assay sensitive at nanogram levels JO - Anal Biochem VL - 160 UR - https://doi.org/10.1016/0003-2697(87)90051-0 DO - 10.1016/0003-2697(87)90051-0 ID - Stoscheck1987 ER - TY - JOUR AU - Fuller, H. R. AU - Mandefro, B. AU - Shirran, S. L. AU - Gross, A. R. AU - Kaus, A. AU - Botting, C. H. PY - 2016 DA - 2016// TI - Spinal muscular atrophy patient iPSC-derived motor neurons have reduced expression of proteins important in neuronal development JO - Front Cell Neurosci VL - 9 UR - https://doi.org/10.3389/fncel.2015.00506 DO - 10.3389/fncel.2015.00506 ID - Fuller2016 ER - TY - JOUR AU - Fuller, H. AU - Slade, R. AU - Jovanov-Milošević, N. AU - Babić, M. AU - Sedmak, G. AU - Šimić, G. PY - 2015 DA - 2015// TI - Stathmin is enriched in the developing corticospinal tract JO - Mol Cell Neurosci VL - 69 UR - https://doi.org/10.1016/j.mcn.2015.09.003 DO - 10.1016/j.mcn.2015.09.003 ID - Fuller2015 ER - TY - STD TI - Oliveros JC. VENNY: an interactive tool for comparing lists with Venn diagrams. 2007. http://bioinfogp.cnb.csic.es/tools/venny/. Accessed 28 Sept 2017. UR - http://bioinfogp.cnb.csic.es/tools/venny/ ID - ref37 ER - TY - JOUR AU - Albert, R. AU - Barabasi, A. L. PY - 2002 DA - 2002// TI - Statistical mechanics of complex networks JO - Rev Mod Phys VL - 74 UR - https://doi.org/10.1103/RevModPhys.74.47 DO - 10.1103/RevModPhys.74.47 ID - Albert2002 ER - TY - JOUR AU - Vidal, M. AU - Cusick, M. E. AU - Barabási, A. L. PY - 2011 DA - 2011// TI - Interactome networks and human disease JO - Cell VL - 144 UR - https://doi.org/10.1016/j.cell.2011.02.016 DO - 10.1016/j.cell.2011.02.016 ID - Vidal2011 ER - TY - JOUR AU - Cowley, M. J. AU - Pinese, M. AU - Kassahn, K. S. AU - Waddell, N. AU - Pearson, J. V. AU - Grimmond, S. M. PY - 2012 DA - 2012// TI - PINA v2.0: mining interactome modules JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr967 DO - 10.1093/nar/gkr967 ID - Cowley2012 ER - TY - JOUR AU - Barabási, A. L. AU - Gulbahce, N. AU - Loscalzo, J. PY - 2011 DA - 2011// TI - Network medicine: a network-based approach to human disease JO - Nat Rev Genet VL - 12 UR - https://doi.org/10.1038/nrg2918 DO - 10.1038/nrg2918 ID - Barabási2011 ER - TY - JOUR AU - Nepusz, T. AU - Yu, H. AU - Paccanaro, A. PY - 2012 DA - 2012// TI - Detecting overlapping protein complexes in protein-protein interaction networks JO - Nat Methods VL - 9 UR - https://doi.org/10.1038/nmeth.1938 DO - 10.1038/nmeth.1938 ID - Nepusz2012 ER - TY - JOUR AU - Vastrik, I. AU - D’Eustachio, P. AU - Schmidt, E. AU - Gopinath, G. AU - Croft, D. AU - de Bono, B. PY - 2008 DA - 2008// TI - Reactome: a curated knowledge base of biologic pathways and processes JO - Genome Biol VL - 8 UR - https://doi.org/10.1186/gb-2007-8-3-r39 DO - 10.1186/gb-2007-8-3-r39 ID - Vastrik2008 ER - TY - JOUR AU - Croft, D. AU - Mundo, A. F. AU - Haw, R. AU - Milacic, M. AU - Weiser, J. AU - Wu, G. PY - 2014 DA - 2014// TI - The Reactome pathway knowledgebase JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1102 DO - 10.1093/nar/gkt1102 ID - Croft2014 ER - TY - JOUR AU - Clemmons, D. R. AU - Busby, W. H. AU - Garmong, A. AU - Schultz, D. R. AU - Howell, D. S. AU - Altman, R. D. PY - 2002 DA - 2002// TI - Inhibition of insulin-like growth factor binding protein 5 proteolysis in articular cartilage and joint fluid results in enhanced concentrations of insulin-like growth factor 1 and is associated with improved osteoarthritis JO - Arthritis Rheum VL - 46 UR - https://doi.org/10.1002/art.10222 DO - 10.1002/art.10222 ID - Clemmons2002 ER - TY - JOUR AU - Busby, W. H. AU - Yocum, S. A. AU - Rowland, M. AU - Kellner, D. AU - Lazerwith, S. AU - Sverdrup, F. PY - 2009 DA - 2009// TI - Complement 1s is the serine protease that cleaves IGFBP-5 in human osteoarthritic joint fluid JO - Osteoarthritis Cartilage VL - 17 UR - https://doi.org/10.1016/j.joca.2008.08.004 DO - 10.1016/j.joca.2008.08.004 ID - Busby2009 ER - TY - JOUR AU - van Osch, G. J. V. M. AU - van den Berg, W. B. AU - Hunziker, E. B. AU - Hauselmann, H. J. PY - 1998 DA - 1998// TI - Differential effects of IGF-1 and TGFβ-2 on the assembly of proteoglycans in pericellular and territorial matrix by cultured bovine articular chondrocytes JO - Osteoarthritis Cartilage VL - 6 UR - https://doi.org/10.1053/joca.1998.0111 DO - 10.1053/joca.1998.0111 ID - van Osch1998 ER - TY - JOUR AU - Wang, Q. AU - Rozelle, A. L. AU - Lepus, C. M. AU - Scanzello, C. R. AU - Song, J. J. AU - Larsen, D. M. PY - 2012 DA - 2012// TI - Identification of a central role for complement in osteoarthritis JO - Nat Med VL - 17 UR - https://doi.org/10.1038/nm.2543 DO - 10.1038/nm.2543 ID - Wang2012 ER - TY - JOUR AU - Murphy, G. PY - 1995 DA - 1995// TI - Matrix metalloproteinases and their inhibitors JO - Acta Orthop Scand Suppl VL - 266 ID - Murphy1995 ER - TY - JOUR AU - Gruys, E. AU - Toussaint, M. J. M. AU - Niewold, T. A. AU - Koopmans, S. J. PY - 2005 DA - 2005// TI - Acute phase reaction and acute phase proteins JO - J Zheihang Univ Sci B VL - 6 UR - https://doi.org/10.1631/jzus.2005.B1045 DO - 10.1631/jzus.2005.B1045 ID - Gruys2005 ER - TY - JOUR AU - Guney, E. AU - Menchem, J. AU - Vidal, M. AU - Barabasi, A. L. PY - 2016 DA - 2016// TI - Network-based in silico drug efficacy screening JO - Nat Commun VL - 7 UR - https://doi.org/10.1038/ncomms10331 DO - 10.1038/ncomms10331 ID - Guney2016 ER -