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Table 3 List of known SLE susceptible SNPs in Thai SLE patients

From: Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population

dbSNPa CHRb BPc RAd Locus Annotation MAF affected MAF unaffected OR SE p
rs35426045 1 161,649,724 A FCGR2B Intergenic 0.80 0.75 1.38 0.09 1.83E−04
rs1234315 1 173,209,324 A TNFSF4 Intergenic 0.53 0.46 1.27 0.07 1.02E−06
rs2205960 1 173,191,475 T TNFSF4 Intergenic 0.27 0.22 1.26 0.08 2.37E−03
rs34889541 1 198,594,769 A ATP6V1G3, Intergenic 0.10 0.13 0.75 0.11 7.66E−03
rs1418190 1 173,361,979 T LOC100506023 ncRNA_intronic 0.59 0.56 1.18 0.07 1.55E−02
rs13306575 1 183,563,302 A NCF2 Nonsynonymous 0.11 0.08 1.48 0.09 1.73E−02
rs13385731 2 33,701,890 C RASGRP3 Intronic 0.13 0.17 0.70 0.09 1.71E−05
rs6705628 2 74,208,362 T DGUOK-AS1 ncRNA_exonic 0.11 0.13 0.79 0.10 1.83E−02
rs1990760 2 163,124,051 T IFIH1 Missense 0.23 0.21 1.17 0.08 4.93E−02
rs10936599 3 169,492,101 T MYNN Synonymous SNV 0.52 0.56 0.84 0.07 6.95E−03
rs564799 3 159,728,987 T IL12A ncRNA_intronic 0.12 0.14 0.80 0.10 1.97E−02
rs10028805 4 102,737,250 A BANK1 Intronic 0.45 0.49 0.87 0.07 4.08E−02
rs7726159 5 1,282,319 A TERT Intron 0.43 0.40 1.25 0.07 5.00E−05
rs2736100 5 1,286,401 C TERT Intron 0.51 0.43 1.25 0.07 4.67E−05
rs10036748 5 150,458,146 T TNIP1 Intronic 0.66 0.61 1.16 0.07 3.04E−02
rs2431697 5 159,879,978 C PTTG1; MIR146A Intergenic 0.07 0.09 0.77 0.13 3.36E−02
rs548234 6 106,568,034 T PRDM1; ATG5 Intergenic 0.67 0.72 0.81 0.07 2.21E−03
rs2230926 6 138,196,066 G TNFAIP3 Missense 0.04 0.03 1.49 0.18 2.92E−02
rs3734266 6 34,823,187 C UHRF1BP1 Intronic 0.21 0.19 1.18 0.08 4.68E−02
rs4728142 7 128,573,967 A KCP; IRF5 Intergenic 0.19 0.13 1.61 0.09 1.34E−07
rs729302 7 128,568,960 C KCP; IRF5 Intergenic 0.25 0.30 0.77 0.07 3.32E−04
rs12531711 7 128,617,466 G IRF5; TNPO3 Intron 0.03 0.01 2.03 0.25 4.27E−03
rs4917014 7 50,305,863 G C7orf72; IKZF1 Intergenic 0.15 0.17 0.81 0.09 1.84E−02
rs7097397 10 50,025,396 A WDFY4 Missense 0.59 0.64 0.78 0.07 3.84E−04
rs4948496 10 63,805,617 C ARID5B Intronic 0.66 0.62 1.17 0.07 2.19E−02
rs1128334 11 128,328,959 T ETS1 UTR3 0.35 0.28 1.36 0.07 1.50E−05
rs2732552 11 35,084,592 C PDHX Intergenic 0.78 0.75 1.18 0.08 3.04E−02
rs11235604 11 72,533,536 T ATG16L2 Missense 0.04 0.05 0.70 0.17 3.93E−02
rs1385374 12 129,300,694 T SLC15A4 Intronic 0.21 0.15 1.46 0.09 7.62E−08
rs10845606 12 12,834,894 A GPR19 Intronic 0.32 0.37 0.75 0.07 3.19E−06
rs2841280 14 105,393,556 C PLD4 Nonsynonymous 0.52 0.45 1.91 0.07 5.81E−08
rs1143679 16 31,276,811 A ITGAM Missense 0.07 0.04 1.71 0.14 6.18E−08
rs11860650 16 31,315,385 A ITGAM Intronic 0.09 0.07 1.74 0.10 4.64E−03
rs1170426 16 68,603,798 T ZFP90 Intronic 0.69 0.73 0.82 0.07 5.91E−03
rs7444 22 21,976,934 C UBE2L3 UTR3 0.64 0.60 1.17 0.07 1.81E−02
rs463426 22 21,809,185 C HIC2; TMEM191C Intergenic 0.38 0.40 0.85 0.08 4.50E−02
  1. adbSNP from single nucleotides polymorphisms database (NCBI)
  2. bChromosome
  3. cPosition
  4. dRisk alleles