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Table 3 List of known SLE susceptible SNPs in Thai SLE patients

From: Meta-analysis of genome-wide association study identifies FBN2 as a novel locus associated with systemic lupus erythematosus in Thai population

dbSNPa

CHRb

BPc

RAd

Locus

Annotation

MAF affected

MAF unaffected

OR

SE

p

rs35426045

1

161,649,724

A

FCGR2B

Intergenic

0.80

0.75

1.38

0.09

1.83E−04

rs1234315

1

173,209,324

A

TNFSF4

Intergenic

0.53

0.46

1.27

0.07

1.02E−06

rs2205960

1

173,191,475

T

TNFSF4

Intergenic

0.27

0.22

1.26

0.08

2.37E−03

rs34889541

1

198,594,769

A

ATP6V1G3,

Intergenic

0.10

0.13

0.75

0.11

7.66E−03

rs1418190

1

173,361,979

T

LOC100506023

ncRNA_intronic

0.59

0.56

1.18

0.07

1.55E−02

rs13306575

1

183,563,302

A

NCF2

Nonsynonymous

0.11

0.08

1.48

0.09

1.73E−02

rs13385731

2

33,701,890

C

RASGRP3

Intronic

0.13

0.17

0.70

0.09

1.71E−05

rs6705628

2

74,208,362

T

DGUOK-AS1

ncRNA_exonic

0.11

0.13

0.79

0.10

1.83E−02

rs1990760

2

163,124,051

T

IFIH1

Missense

0.23

0.21

1.17

0.08

4.93E−02

rs10936599

3

169,492,101

T

MYNN

Synonymous SNV

0.52

0.56

0.84

0.07

6.95E−03

rs564799

3

159,728,987

T

IL12A

ncRNA_intronic

0.12

0.14

0.80

0.10

1.97E−02

rs10028805

4

102,737,250

A

BANK1

Intronic

0.45

0.49

0.87

0.07

4.08E−02

rs7726159

5

1,282,319

A

TERT

Intron

0.43

0.40

1.25

0.07

5.00E−05

rs2736100

5

1,286,401

C

TERT

Intron

0.51

0.43

1.25

0.07

4.67E−05

rs10036748

5

150,458,146

T

TNIP1

Intronic

0.66

0.61

1.16

0.07

3.04E−02

rs2431697

5

159,879,978

C

PTTG1; MIR146A

Intergenic

0.07

0.09

0.77

0.13

3.36E−02

rs548234

6

106,568,034

T

PRDM1; ATG5

Intergenic

0.67

0.72

0.81

0.07

2.21E−03

rs2230926

6

138,196,066

G

TNFAIP3

Missense

0.04

0.03

1.49

0.18

2.92E−02

rs3734266

6

34,823,187

C

UHRF1BP1

Intronic

0.21

0.19

1.18

0.08

4.68E−02

rs4728142

7

128,573,967

A

KCP; IRF5

Intergenic

0.19

0.13

1.61

0.09

1.34E−07

rs729302

7

128,568,960

C

KCP; IRF5

Intergenic

0.25

0.30

0.77

0.07

3.32E−04

rs12531711

7

128,617,466

G

IRF5; TNPO3

Intron

0.03

0.01

2.03

0.25

4.27E−03

rs4917014

7

50,305,863

G

C7orf72; IKZF1

Intergenic

0.15

0.17

0.81

0.09

1.84E−02

rs7097397

10

50,025,396

A

WDFY4

Missense

0.59

0.64

0.78

0.07

3.84E−04

rs4948496

10

63,805,617

C

ARID5B

Intronic

0.66

0.62

1.17

0.07

2.19E−02

rs1128334

11

128,328,959

T

ETS1

UTR3

0.35

0.28

1.36

0.07

1.50E−05

rs2732552

11

35,084,592

C

PDHX

Intergenic

0.78

0.75

1.18

0.08

3.04E−02

rs11235604

11

72,533,536

T

ATG16L2

Missense

0.04

0.05

0.70

0.17

3.93E−02

rs1385374

12

129,300,694

T

SLC15A4

Intronic

0.21

0.15

1.46

0.09

7.62E−08

rs10845606

12

12,834,894

A

GPR19

Intronic

0.32

0.37

0.75

0.07

3.19E−06

rs2841280

14

105,393,556

C

PLD4

Nonsynonymous

0.52

0.45

1.91

0.07

5.81E−08

rs1143679

16

31,276,811

A

ITGAM

Missense

0.07

0.04

1.71

0.14

6.18E−08

rs11860650

16

31,315,385

A

ITGAM

Intronic

0.09

0.07

1.74

0.10

4.64E−03

rs1170426

16

68,603,798

T

ZFP90

Intronic

0.69

0.73

0.82

0.07

5.91E−03

rs7444

22

21,976,934

C

UBE2L3

UTR3

0.64

0.60

1.17

0.07

1.81E−02

rs463426

22

21,809,185

C

HIC2; TMEM191C

Intergenic

0.38

0.40

0.85

0.08

4.50E−02

  1. adbSNP from single nucleotides polymorphisms database (NCBI)
  2. bChromosome
  3. cPosition
  4. dRisk alleles
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Arthritis Research & Therapy

ISSN: 1478-6362

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