Identification of HBEGF+ fibroblasts in the remission of rheumatoid arthritis by integrating single-cell RNA sequencing datasets and bulk RNA sequencing datasets

Chen, Nachun; Fan, Baoying; He, Zhiyong; Yu, Xinping; Wang, Jinjun

doi:10.1186/s13075-022-02902-x

Table 1 Induction of datasets

From: Identification of HBEGF+ fibroblasts in the remission of rheumatoid arthritis by integrating single-cell RNA sequencing datasets and bulk RNA sequencing datasets

Accession	Tissue	RNA library	Organism	Source	Platforms
GSM4819747	PBMC from RA patient	Single-cell RNA sequencing	Homo sapiens	GEO	BGISEQ-500
SDY998	Synovial cells from RA patient	Single-cell RNA sequencing	Homo sapiens	NIH IMMPORT	Illumina HiSeq 2500
SDY1599	CD45− synovial cells from RA patient	Single-cell RNA sequencing	Homo sapiens	NIH IMMPORT	Illumina NextSeq 500
GSE104782	Chondrocytes from OA patient	Single-cell RNA sequencing	Homo sapiens	GEO	Illumina HiSeq 4000
GSE133449	Meniscus cells from OA patient	Single-cell RNA sequencing	Homo sapiens	GEO	HiSeq X Ten
GSE134420	CD45+CD11b+Ly6G− synovial cells from mice with different states of arthritis (health and K/BxN serum transfer arthritis).	Single-cell RNA sequencing	Mus musculus	GEO	Illumina HiSeq 2500
GSE145286	Synovial cells from mice with different states of arthritis (health, K/BxN serum transfer arthritis, and arthritis after treatment).	Single-cell RNA sequencing	Mus musculus	GEO	Illumina NextSeq 500
GSE77298	Synovial cells from healthy and RA patients	Bulk RNA sequencing	Homo sapiens	GEO	Affymetrix Human Genome U133 Plus 2.0 Array
GSE55584	Synovial cells from OA and RA patients	Bulk RNA sequencing	Homo sapiens	GEO	Affymetrix Human Genome U133A Array
GSE55457	Synovial cells from healthy, OA, and RA patients	Bulk RNA sequencing	Homo sapiens	GEO	Affymetrix Human Genome U133A Array
GSE55235	Synovial cells from healthy, OA, and RA patients	Bulk RNA sequencing	Homo sapiens	GEO	Affymetrix Human Genome U133A Array
GSE39340	Synovial cells from healthy, OA, and RA patients	Bulk RNA sequencing	Homo sapiens	GEO	Illumina HumanHT-12 V4.0 expression beadchip
GSE97165	Synovial tissue from RA patients before and after triple DMARD treatment	Bulk RNA sequencing	Homo sapiens	GEO	Illumina HiSeq 2000
GSE109448	Fibroblast from synovium	Bulk RNA sequencing	Homo sapiens	GEO	Illumina NextSeq 500
GSE123492	Macrophages from synovium	Bulk RNA sequencing	Homo sapiens	GEO	Illumina NextSeq 500

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ISSN: 1478-6362

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