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Table 1 PCR primers

From: Exogenous sphingomyelinase increases collagen and sulphated glycosaminoglycan production by primary articular chondrocytes: an in vitro study

Gene

Strand

Sequence

Annealing temp (°C)

MgCl2 (mmol/l)

Product size (bp)

Reference/GenBank accession number

Acidic SMase

Forward

5'-ATCGGCCTTAATCCTGGTGA-3'

58

2.5

151

AF325550

 

Reverse

5'-GACTGGACACGGAGAGGGC-3'

    

Neutral SMase

Forward

5'-TTGGCAGTGGCCTCTGTGTG-3'

58

2.5

151

NM031360

 

Reverse

5'-AGTCCGCTTAGATGGAGCACC-3'

    

GAPDH

Forward

5'-TGGTCACCAGGGCTGCTTTTA-3'

60

2.5

746

U85042

 

Reverse

5'-CGCCTGCTTCACCACCTTCT-3'

    

Sox9

Forward

5'-GGGCGAGCCGGACCTGAAGAA-3'

53

1.5

321

AF278703

 

Reverse

5'-CGCTCCGCCTCCTCCACGAAC-3'

    

Col2a1

Forward

5'-GCCTCGCGGTGAGCCATGATC-3'

60

1.5

IIA: 472

Valcourt and coworkers [30]

 

Reverse

5'-CTCCATCTCTGCCACGGGGT-3'

  

IIB: 268

 
  1. *Unless previously published, primers were designed to GenBank sequences using Primer Express® software (Applied Biosystems). bp, base pairs; SMase, sphingomyelinase.