SOX9 transduction of a human chondrocytic cell line identifies novel genes regulated in primary human chondrocytes and in osteoarthritis

Table 3 Predicted SOX9 binding sites in candidate genes^a

Gene	Conserved SOX9 binding site, relative to transcription start site	Transcription start site (bp position based on homo sapiens genome build 35.1)
APOD	+2998 bp to +3011 bp +3110 bp to +3123 bp	CHR3_RANDOM:544561
GAPDH	None passed criteria	CHR12:6513945
RGC32	+2534 bp to +2547 bp	CHR13:40929712
SPINT1	-1183 bp to -1170 bp	CHR15:38923534
SRPX	+3939 bp to +3952 bp +5628 bp to +5641 bp +15773 bp to +15786 bp	CHRX:37836348

^aBase pair (bp) positions are given relative to the transcription start site of each gene. In all instances, positive numbers describe sites within the first intron of the gene.

ISSN: 1478-6362