From: Identification of three new cis-regulatory IRF5 polymorphisms: in vitro studies
Polymorphism | Position | Gene | Alleles | MAF | Selection criteriab | EMSA | Reporter |
---|---|---|---|---|---|---|---|
rs4731530 | 128562578 | 5' IRF5 | C > T | 39.9 | Hap | - | Â |
rs6950728 | 128565661 | 5' IRF5 | G > A | 30.9 | r2 = 0.97 | - | Â |
rs11982901 | 128566754 | 5' IRF5 | C > T | 31.6 | r2 = 0.97 | - | Â |
rs4728141 | 128567032 | 5' IRF5 | C > T | 49.5 | Hap | - | Â |
rs13245639 | 128567810 | 5' IRF5 | C > T | 31.6 | r2 = 0.97 | + | + |
rs729302 | 128568960 | 5' IRF5 | A > C | 31.1 | r2 = 1.0 | - | Â |
rs729068 | 128569561 | 5' IRF5 | C > T | 31.1 | r2 = 0.9 | - | Â |
rs12706860 | 128570026 | 5' IRF5 | C > G | 33.7 | r2 = 0.83 | + | + |
rs7808659 | 128570238 | 5' IRF5 | C > A | 30.4 | r2 = 0.9 | - | Â |
rs754284 | 128571478 | 5' IRF5 | C > G | 31.6 | r2 = 0.87 | - | Â |
rs4728142 | 128573967 | 5' IRF5 | G > A | 47.8 | Hap | - | Â |
rs7801838 | 128573994 | 5' IRF5 | C > T | 28.9 | r2 = 0.73 | - | Â |
rs3778754 | 128575552 | 5' IRF5 | G > C | 48.9 | Hap | + | - |
rs11269962 | 128575812 | 5' IRF5 | ins > del | 48.9 | RNA-seq | + | + |
rs3757388 | 128576023 | 5' IRF5 | A > G | 33.3 | Hap | - | Â |
rs3757387 | 128576086 | 5' IRF5 | T > C | 49.4 | Hap | - | Â |
rs3757385 | 128577304 | 5' IRF5 | G > T | 33.3 | Hap | - | Â |
rs3807135 | 128577617 | 5' IRF5 | C > T | 33.0 | Hap | - | Â |
CGGGG indel | 128577931 | 5' IRF5 | del > ins | 48.4 | Known cis-eQTL | + | + |
rs3807307 | 128579202 | IRF5 | C > T | 47.8 | Hap | + | - |
rs3823536 | 128579666 | IRF5 | A > G | 47.8 | Hap | - | Â |
rs3778753 | 128580042 | IRF5 | G > A | 47.8 | Hap | - | Â |
rs3778752 | 128580047 | IRF5 | T > G | 47.8 | Hap | - | Â |
rs3778751 | 128580048 | IRF5 | T > A | 47.8 | Hap | - | Â |
rs3807306 | 128580680 | IRF5 | T > G | 45.7 | Hap/microarray | - | Â |
rs17424179 | 128657995 | TPNO3 | G > A | 3.8c | Microarray | + | - |