Bacteria identified in ReA and UA patients (n = 68)
|
Bacteria previously detected in arthritis
|
Acinetobacter baumannii
|
(1 ReA)
|
AY738400
|
1,384
|
99.86
|
Acinetobacter schindleri
|
(1 UA)
|
AJ278311
|
1,367
|
98.83
|
Actinomyces sp.
|
(1 UA)
|
AY008315
|
1,420
|
98.73
|
Aeromonas sp.
|
(1 UA)
|
U88656
|
1,396
|
99.36
|
Aeromonas sp.
|
(2 UA)
|
AF099027
|
1,336
|
98.58
|
Afipia genosp 7
|
(1 UA)
|
U87773
|
1,336
|
97.38
|
Afipia genosp 9
|
(1 ReA)
|
U87779
|
1,335
|
99.62
|
Afipia genosp 9
|
(1 ReA)
|
U87775
|
1,256
|
97.00
|
Afipia genosp 9
|
(1 ReA)
|
U87777
|
1,337
|
99.55
|
Corynebacterium coyleae
|
(1 UA)
|
X96497
|
1,360
|
99.04
|
Escherichia coli
|
(1 ReA)
|
AP009048
|
1,389
|
99.71
|
Escherichia sp.
|
(2 ReA)
|
DQ337503
|
1,390
|
99.71
|
Klebsiella sp.
|
(1 UA)
|
U32868
|
1,387
|
99.57
|
Neisseria flava
|
(1 UA)
|
AJ239301
|
1,338
|
98.43
|
Paracoccus sp.
|
(1 UA)
|
AY745834
|
1,308
|
99.92
|
Propionibacterium acnes
|
(1 ReA+ 2 UA)
|
AB108477
|
1,377
|
100.00
|
Pseudomonas sp.
|
(1 UA)
|
DQ079062
|
1,388
|
98.63
|
Ralstonia sp.
|
(1 ReA)
|
DQ227340
|
1,382
|
100.00
|
Rhodococcus sp.
|
(2 UA)
|
AF420412
|
1,365
|
99.85
|
Shigella flexneri
|
(2 ReA + 1 UA)
|
X96963
|
1,389
|
99.71
|
Shigella sonnei
|
(1 ReA)
|
X96964
|
1,389
|
99.86
|
Shigella sonnei
|
(1 UA)
|
CP000038
|
1,390
|
97.70
|
Sphingomonas sp.
|
(2 UA)
|
AJ864842
|
1,329
|
99.77
|
Staphylococcus aureus
|
(1 UA)
|
L37597
|
1,400
|
99.93
|
Staphylococcus haemolyticus
|
(1 ReA)
|
AP006716
|
1,400
|
99.93
|
Staphylococcus sp.
|
(1 ReA)
|
AJ704792
|
1,400
|
99.72
|
Staphylococcus sp.
|
(1 UA)
|
AB177642
|
1,399
|
99.71
|
Stenotrophomonas sp.
|
(1 UA)
|
AF409004
|
1,382
|
99.13
|
Streptococcus infantis
|
(1 UA)
|
AY485603
|
1,385
|
99.64
|
Streptococcus mitis
|
(2 UA)
|
AY005045
|
1,385
|
99.57
|
Streptococcus sanguinis
|
(1 UA)
|
AF003928
|
1,397
|
99.79
|
Bacteria not previously detected in arthritis
|
Bosea vestrisii
|
(1 UA)
|
AF288302
|
1,336
|
99.70
|
Brevundimonas diminuta
|
(1 ReA)
|
X87274
|
1,308
|
99.62
|
Corynebacterium durum
|
(2 UA)
|
AF537593
|
1,364
|
99.05
|
Corynebacterium tuberculostearicum
|
(2 UA)
|
AJ438044
|
1,368
|
99.71
|
Enterococcus cecorum
|
(1 UA)
|
AF061009
|
1,398
|
99.43
|
Enterobacter hormaechei
|
(1 UA)
|
AY995561
|
1,395
|
99.64
|
Kingella oralis
|
(1 UA)
|
L06164
|
1,389
|
98.78
|
Leptotrichia sp.
|
(1 UA)
|
AY008309
|
1,359
|
99.85
|
Microbacterium oxydans
|
(1 UA)
|
AJ717356
|
1,374
|
98.69
|
Oxalobacter sp.
|
(1 UA)
|
AJ496038
|
1,387
|
98.05
|
Paracoccus yeei
|
(1 UA)
|
AY014169
|
1,309
|
99.77
|
Bacteria not previously detected in humans
|
Aquabacterium commune
|
(2 ReA)
|
AF035054
|
1,367
|
99.85
|
Blastococcus sp.
|
(1 UA)
|
AJ316573
|
1,357
|
97.27
|
Bradyrhizobium japonicum
|
(2 UA)
|
BA000040
|
1,333
|
99.17
|
Halomonas sp.
|
(1 UA)
|
AJ302088
|
1,389
|
98.85
|
Leucobacter luti
|
(1 ReA)
|
AM072819
|
1,369
|
98.39
|
Novosphingobium sp.
|
(1 UA)
|
AB177883
|
1,335
|
97.00
|
Pedomicrobium australicum
|
(1 UA)
|
X97693
|
1,324
|
98.64
|
Pirellula sp.
|
(1 UA)
|
X81945
|
1,322
|
96.14*
|
Sphingobacterium asaccharolytica
|
(1 ReA)
|
Y09639
|
1,324
|
98.11
|
Variovorax sp.
|
(1 ReA)
|
AB196432
|
1,383
|
99.28
|
Uncultured bacteria
| | | | |
α Proteobacterium
|
(1 ReA)
|
AY162046
|
1,308
|
99.62
|
α Proteobacterium
|
(1 ReA+ 21 UA)
|
AY162053
|
1,332
|
99.85
|
β Proteobacterium
|
(1 UA)
|
AF236007
|
1,371
|
99.71
|
Caulobacter endosymbiont of Tetranychus urticae
|
(1 UA)
|
AY753176
|
1,334
|
99.63
|
γ Proteobacterium
|
(1 ReA)
|
AY162032
|
1,395
|
97.42
|
Manganese-oxidizing bacterium
|
(2 UA)
|
U53824
|
1,320
|
99.85
|
Uncultured α proteobacterium
|
(1 UA)
|
AF445680
|
1,329
|
97.06
|
Uncultured β proteobacterium
|
(1 ReA)
|
AF445700
|
1,372
|
99.78
|
Uncultured candidate division OP10 bacterium
|
(3 ReA + 4 UA)
|
AF418946
|
1,297
|
90.98*
|
Uncultured γ proteobacterium
|
(1 UA)
|
AJ318146
|
1,397
|
97.35
|
Uncultured γ proteobacterium
|
(1 UA)
|
AF324537
|
1,387
|
99.71
|
Unclassified Enterobacteriaceae
|
(1 UA)
|
AY375058
|
1,391
|
97.56
|
Uncultured eubacterium
|
(1 ReA)
|
AJ292601
|
1,334
|
96.93
|
Uncultured soil bacterium
|
(1 UA)
|
AF423262
|
1,295
|
96.91
|
Unclassified proteobacteria
|
(1 ReA)
|
AY820722
|
1,383
|
96.46*
|
Unclassified Rhodocyclaceae
|
(2 UA)
|
AY328759
|
1,388
|
99.42
|
Bacteria identified in control group (RA and OA patients; n = 12)
|
Bacteria previously detected in arthritis
|
Actinomyces naeslundii
|
(1 RA)
|
AJ234050
|
1,392
|
97.84
|
Brucellaceae bacterium
|
(1 OA)
|
AY353698
|
1,333
|
99.17
|
Corynebacterium aurimucosum
|
(1 RA)
|
AY536427
|
1,369
|
99.34
|
Streptococcus thermophilis
|
(1 RA)
|
AY188354
|
1,397
|
99.36
|
Bacteria not previously detected in arthritis
|
Alcaligenes sp.
|
(1 OA)
|
AF430122
|
1,386
|
98.63
|
Caulobacter sp.
|
(2 RA)
|
AJ227775
|
1,323
|
99.70
|
Bacteria not previously detected in humans
|
Caulobacter leidyia
|
(1 OA)
|
AJ227812
|
1,324
|
100.00
|
Curvibacter gracilis
|
(1 OA)
|
AB109889
|
1,379
|
99.71
|
Rhodococcus fascians
|
(1 RA)
|
Y11196
|
1,365
|
99.71
|
Uncultured bacteria
| | | | |
Antarctic bacterium
|
(1 RA)
|
AJ440974
|
1,321
|
98.86
|
Uncultured α proteobacterium
|
(1 RA)
|
AJ604541
|
1,324
|
98.60
|
Uncultured δ proteobacterium
|
(1 RA)
|
AY921777
|
1,402
|
97.22
|
Common bacteria
d
(n = 20)
|
Bacteria previously detected in arthritis
|
Achromobacter xylosoxidans
|
(1 UA + 1 OA)
|
AF439314
|
1,378
|
99.71
|
Acinetobacter sp.
|
(2 ReA + 1 RA)
|
Z93442
|
1,365
|
99.35
|
Alcaligenes faecalis
|
(2 ReA+ 1 UA+ 1 RA+ 1 OA)
|
AY548384
|
1,385
|
99.93
|
Escherichia coli
|
(3 ReA+ 7 UA+ 1 RA+ 2 OA)
|
V00348
|
1,393
|
100.00
|
Escherichia coli
|
(3 ReA+ 9 UA+ 3 RA+ 2 OA)
|
U00096
|
1,390
|
100.00
|
Flavobacterium mizutaii
|
(2 ReA + 7 UA + 1 RA)
|
AJ438175
|
1,384
|
94.44*
|
Pseudomonas sp.
|
(2 ReA + 1 UA + 1 RA)
|
AJ237965
|
1,376
|
99.56
|
Stenotrophomonas maltophilia
|
(3 ReA + 4 UA + 1 OA)
|
AJ293470
|
1,395
|
99.93
|
Shigella sp.
|
(2 ReA+ 4 UA+ 2 RA+ 1 OA)
|
DQ337523
|
1,392
|
99.93
|
Bacteria not previously detected in arthritis
|
Alcaligenes sp.
|
(1 UA + 1 OA)
|
AY672759
|
1,345
|
99.11
|
Bradyrhizobium elkanii
|
(1 ReA+ 2 UA+ 1 RA+ 1 OA)
|
AY904749
|
1,338
|
99.93
|
Pseudomonas poae
|
(1 ReA + 1 OA)
|
AJ492829
|
1,386
|
99.93
|
Ralstonia sp.
|
(5 ReA + 4 UA + 3 RA)
|
AB045276
|
1,388
|
100.00
|
Serratia proteamaculans
|
(1 ReA + 1 RA)
|
AJ233435
|
1,387
|
97.76
|
Bacteria not previously detected in humans
|
Uncultured bacteria
|
Bacteroidetes bacterium
|
(2 UA + 1 RA)
|
AY395022
|
1,196
|
97.49
|
γ proteobacterium
|
(2 ReA + 3 UA + 1 OA)
|
AY162042
|
1,399
|
99.88
|
γ proteobacterium
|
(4 ReA + 6 UA + 2 RA)
|
AY162068
|
1,397
|
99.93
|
Swine manure bacterium
|
(6 ReA+ 5 UA+ 2 RA+ 1 OA)
|
AY167969
|
1,388
|
100.00
|
Uncultured Flavobacterium sp.
|
(1 ReA+ 4 UA+ 2 RA+ 1 OA)
|
DQ168834
|
1,193
|
97.15
|
Uncultured Sphingobacterium sp.
|
(2 ReA+ 8 UA+ 1 RA+ 1 OA)
|
AB076874
|
1,390
|
94.31*
|