Table 1 Comparison of SNPs in the present study with the literature (Reference SNP (rs) and PCR primers)
PubMed identifier | Gene | SNP reference | Allele | MAFa | Found in the literature? | PCR primers |
|---|---|---|---|---|---|---|
Present study | TLR1 | rs5743618 | G/T | No | Forward, 5'-CCCGGAAAGTTATAGAGGAACCCT-3' | |
Reverse, 5'-TTCACCCAGAAAGAATCGTGCCCA-3' | ||||||
Present study | rs5743594 | C/T | No | Forward, 5'-AAGATCAGGGTGGTAGTGTTGG-3' | ||
Reverse, 5'-CCCAATTCTTCCTCTCCAGCTT-3' | ||||||
Present study | TLR2 | rs3804099 | C/T | No | Forward, 5'-ATCGTCTTCCTGGTTCAAGC-3' | |
Reverse, 5'-CAGTTCCAAACATTCCACGG-3' | ||||||
Present study | rs4696480 | T/A | No | Forward, 5'-CAAATTTAAAAGAGGGCAAGAAA-3' | ||
Reverse, 5'-CAGTTTATTGTGAGAATGAGTTT-3' | ||||||
Present study | TLR4 | rs2737191 | A/G | No | Forward, 5'-CATCCCCTACTTTCTTCACA-3' | |
Reverse, 5'-TCAACTCAGGACCCATAATC-3' | ||||||
Present study | rs4986790 | A/G | 32%/32.50% | Yes: other name Asp299Gly | Forward, 5'-TCTGGGAGAATTTAGAAATGAA-3' | |
Reverse, 5'-AAACGTATCCAATGAAAAGAAG-3' | ||||||
Present study | rs1554973 | T/C | No | Forward, 5'-CAAAGGATATGTGAACAATAGG-3' | ||
Reverse, 5'-AATCCCGTGAGTAGAGAATG-3' | ||||||
Present study | TLR6 | rs5743810 | C/T | No | Forward, 5'-ACTTGGTTCGTGATATGTTCTA-3' | |
Reverse, 5'-AAACCCTTCACCTTGTTTTTCA-3' | ||||||
Present study | TLR9 | rs187084 | C/T | No | Forward, 5'-TCTGGGACAAGTCCAGCCAG-3' | |
Reverse, 5'-GGACACTCCCAGCTCTGAAG-3' | ||||||
Present study | rs352140 | T/C | No | Forward, 5'-CTGCTAGCACACCGGATCAT-3' | ||
Reverse, 5'-ATGATACCACCCAGAGTGGG-3' |