Table 6 NP vs AC microarray comparison
Gene description | Gene symbol | AC mean | AF mean | NP mean | Fold change (NP/AC) |
|---|---|---|---|---|---|
brain abundant, membrane attached signal protein 1 | BASP1 | 0.02 | 57.19 | 384.21 | 16167.90 |
keratin 18 | KRT18 | 0.01 | 0.04 | 94.10 | 15990.45 |
Tenomodulin | TNMD | 0.01 | 241.03 | 102.36 | 15087.56 |
TNF, alpha-induced protein 6 | TNFAIP6 | 0.01 | 304.98 | 121.88 | 8205.96 |
keratin 8 | KRT8 | 0.09 | 0.39 | 714.79 | 7607.92 |
hypothetical protein BC012029 | LOC152573 | 0.05 | 0.18 | 230.02 | 4635.12 |
TNF, alpha-induced protein 6 | TNFAIP6 | 0.19 | 3649.85 | 508.71 | 2648.51 |
SH3 domain binding glutamic acid-rich protein | SH3BGR | 0.08 | 20.83 | 172.70 | 2230.52 |
cadherin 2, type 1, N-cadherin (neuronal) | CDH2 | 0.09 | 0.22 | 180.47 | 1941.17 |
chordin | CHRD | 0.03 | 1.29 | 57.29 | 1671.45 |
Rat sarcoma (ras) homolog gene family, member B | RHOB | 0.24 | 0.04 | 383.01 | 1627.81 |
homeobox B8 | HOXB8 | 0.08 | 9.11 | 119.75 | 1591.12 |
Rho GTPase activating protein 27 | ARHGAP27 | 0.08 | 0.72 | 89.24 | 1072.84 |
forkhead box F1 | FOXF1 | 0.43 | 703.54 | 457.76 | 1054.86 |
plakophilin 2 | PKP2 | 0.13 | 0.48 | 77.71 | 603.25 |
homeobox B6 | HOXB6 | 0.11 | 58.21 | 61.73 | 580.12 |
adaptor-related protein complex 2, mu 1 subunit | AP2M1 | 0.55 | 350.92 | 305.70 | 557.26 |
transketolase-like 1 | TKTL1 | 0.89 | 4.59 | 478.18 | 536.27 |
cytochrome b-245, alpha polypeptide | CYBA | 0.16 | 0.77 | 83.63 | 513.67 |
phosphatidylethanolamine-binding protein 4 | PEBP4 | 0.84 | 113.44 | 429.31 | 511.40 |
forkhead box F2 | FOXF2 | 0.60 | 416.30 | 283.89 | 470.91 |
Kruppel-like factor 6 | KLF6 | 0.13 | 0.03 | 55.84 | 444.91 |
optineurin | OPTN | 0.22 | 0.36 | 88.35 | 407.25 |
aquaporin 1 (Colton blood group) | AQP1 | 0.42 | 5.55 | 144.13 | 346.12 |
RAB3B, member RAS oncogene family | RAB3B | 0.18 | 0.27 | 58.47 | 333.33 |
similar to sushi domain containing 2 | SUSD2 | 1.05 | 34.26 | 300.30 | 286.96 |
sclerostin domain containing 1 | SOSTDC1 | 0.28 | 0.53 | 79.27 | 286.23 |
CD36 molecule (thrombospondin receptor) | CD36 | 0.27 | 96.74 | 71.61 | 262.65 |
capping protein (actin filament), gelsolin-like | CAPG | 0.21 | 12.70 | 53.11 | 257.62 |
similar to zinc finger homeodomain 4 | ZFHX4 | 0.23 | 160.03 | 55.13 | 241.22 |
neurotrophic tyrosine kinase, receptor, type 2 | NTRK2 | 0.62 | 248.28 | 106.60 | 172.40 |
synaptosomal-associated protein, 25 kDa | SNAP25 | 0.55 | 0.81 | 94.22 | 171.81 |
lectin, galactoside-binding, soluble, 1 (galectin 1) | LGALS1 | 0.57 | 81.20 | 88.20 | 155.33 |
testis derived transcript (3 Lin11, Isl-1 & Mec-3 (LIM) domains) | TES | 0.38 | 32.63 | 55.66 | 145.10 |
Related-rat sarcoma viral (r-ras) oncogene homolog | RRAS | 0.74 | 0.39 | 93.40 | 125.71 |
sorting nexin family member 30 | SNX30 | 0.74 | 31.31 | 89.00 | 120.18 |
vanin 1 | VNN1 | 0.69 | 67.28 | 82.51 | 119.73 |
collagen, type XVIII, alpha 1 | COL18A1 | 1.02 | 102.46 | 116.62 | 114.48 |
transmembrane protein 100 | TMEM100 | 1.05 | 1.80 | 116.48 | 110.68 |
macrophage migration inhibitory factor | MIF | 3.47 | 1.70 | 368.05 | 105.96 |
ectodermal-neural cortex | ENC1 | 0.74 | 53.63 | 75.21 | 101.74 |
pleiotrophin | PTN | 208.08 | 54.11 | 1.10 | -189.18 |
cytokine-like 1 | CYTL1 | 11388.79 | 19.33 | 29.48 | -386.29 |
retinoic acid receptor responder 1 | RARRES1 | 974.75 | 156.02 | 1.98 | -491.73 |
phenylalanine hydroxylase | PAH | 195.83 | 0.24 | 0.32 | -612.20 |
integrin-binding sialoprotein | IBSP | 300.90 | 0.06 | 0.37 | -817.30 |
fibulin 1 | FBLN1 | 199.29 | 0.22 | 0.13 | -1511.93 |
collagen, type X, alpha 1 | COL10A1 | 1192.84 | 7.19 | 0.79 | -1518.56 |
peptidase inhibitor 15 | PI15 | 478.32 | 83.74 | 0.10 | -5002.83 |