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Table 1 PCR primers and conditions

From: Early response genes induced in chondrocytes stimulated with the inflammatory cytokine interleukin-1beta

   

Annealing

 

Product

Gene

Primers

 

temperature

Cycles

length*

MMP-13

CCAGTGGTGGTGATGAAGATG

Sense

52°C

25

143

 

TTCTCGGAGCCTCTCAGTC

Antisense

   

c-Jun

GGAAACGACCTTCTATGACGATGCCCTCAA

Sense

63°C

22

316

 

GAACCCCTCCTGCTCATCTGTCACGTTCTT

Antisense

   

JunD

GAGTGTTCGATTCTGCCCTA

Sense

53°C

22

214

 

TGTGGACTCGTAGCAAAACA

Antisense

   

JunB

CCAGTCCTTCCACCTCGACGTTTACAAG

Sense

58°C

22

257

 

GACTAAGTGCGTGTTTCTTTTCCACAGTAC

Antisense

   

egr-1

TCCCGGCTCCTCGACCTAC

Sense

60°C

25

177

 

AAGGTTGCTGTCATGTCCGAAAG

Antisense

   
  1. GAPDH was amplified using Clontech's human GPDH amplimer set with an annealing temperature of 58°C and 25 cycles of amplification. MMP-13 = matrix metalloproteinase-13; egr-1 = early growth response gene-1. *Measured in base pairs.