Investigating a pathogenic role for TXNDC5 in rheumatoid arthritis

Chang, Xiaotian; Zhao, Yan; Yan, Xinfeng; Pan, Jihong; Fang, Kehua; Wang, Lin

doi:10.1186/ar3429

Arthritis Research & Therapy

Table 1 Single nucleotide polymorphism (SNP) information

From: Investigating a pathogenic role for TXNDC5 in rheumatoid arthritis

SNP ID	Chromosome position	Locus	Allele	Protein residue
rs1044104	7881311	3' near gene	C/T
rs9505298	7881449	3' near gene	A/G
rs41302895	7881754	3' UTR	A/T
rs1043784	7881931	3' UTR	A/G
rs7764128	7882205	3' UTR	A/G
rs8643	7883073	3' UTR	A/G
rs9502656	7883386	synonymous	T	Asp [D]
rs35264740	7883865	intron	C/T
rs17764309	7883916	intron	A/G
rs17696707	7884242	intron	A/G
rs35871461	7884291	intron	C/T
rs2277105	7884652	synonymous	A	Ala [A]	tag SNP
rs1225936	7885184	intron	A/C
rs1225937	7885302	intron	C/T
rs35794653	7885337	intron	-/A
rs9505300	7885364	intron	C/T
rs1225938	7886534	intron	A/G
rs34342519	7886673	intron	-/C
rs11962800	7886905	intron	A/G
rs9505301	7887131	intron	A/G
rs372578	7887223	intron	A/G
rs7740689	7888066	intron	A/G
rs89715	7888168	intron	C/T
rs7745225	7888251	intron	C/T
rs378963	7888328	intron	C/T
rs45441296	7889033	missense	A	Met [M]
rs1225944	7889088	intron	C/T
rs34782746	7889254	intron	C/T
rs1225946	7889465	intron	C/T
rs7746818	7889466	intron	A/G
rs34228534	7889773	frame shift		Gln [Q]
rs1225947	7890121	intron	G/T
rs13873	7891160	intron	G/T		tag SNP
rs34963444	7891384	intron	C/T
rs7771314	7891403	intron	C/T
rs9502657	7891682	intron	A/C
rs9502658	7891947	synonymous	T	Phe [F]
rs35365768	7892037	intron	-/C
rs1225950	7892143	intron	C/G
rs7749719	7894695	intron	C/T
rs1238994	7894794	intron	G/T
rs35650329	7895782	intron	-/G
rs443861	7896491	intron	A/G		tag SNP
rs369086	7898875	intron	A/G		tag SNP
rs408014	7899394	intron	A/G
rs368074	7899569	intron	C/G
rs420970	7899651	intron	C/T
rs1225954	7900028	intron	A/G
rs1225955	7900709	intron	A/G
rs6933089	7900856	intron	C/T
rs13209404	7909967	intron	C/T
rs13210097	7911345	5' near gene	A/C
rs9502663	7911474	5' near gene	A/C
rs3812162	7911702	5' near gene	A/C		tag SNP
rs34066135	7911855	5' near gene	-/G
rs1632346	7913546	intron	C/T		tag SNP
rs1743634	7916207	intron	A/T		tag SNP
rs9505309	7917528	intron	G/T		tag SNP
rs6922018	7918311	intron	A/G		tag SNP
rs6923488	7918405	intron	C/T		tag SNP
rs1594467	7920361	intron	A/G		tag SNP
rs419588	7920808	intron	C/T		tag SNP
rs365936	7920904	intron	A/C		tag SNP
rs1237879	7932261	intron	A/G		tag SNP
rs627957	7936475	intron	C/T		tag SNP
rs155487	7938773	intron	A/G		tag SNP
rs10484327	7942566	intron	A/C		tag SNP
rs7764884	7970540	intron	A/G		tag SNP
rs7763447	7973380	intron	A/G		tag SNP
rs9406071	7974705	intron	C/T		tag SNP
rs6597292	7975259	intron	G/T		tag SNP
rs197119	7976745	intron	A/G		tag SNP
rs6597293	7987883	intron	C/G		tag SNP
rs11754300	7988766	intron	C/T		tag SNP
rs7744601	7988910	intron	C/T		tag SNP
rs2567226	7993977	intron	A/G		tag SNP
rs12204273	8002705	intron	A/G		tag SNP
rs9392182	8009035	intron	A/T		tag SNP
rs2207720	8019197	intron	C/T		tag SNP
rs9392189	8021532	intron	A/G		tag SNP
rs2815128	8023462	intron	G/T		tag SNP
rs2815142	8043546	intron	A/G		tag SNP
rs2743992	8054722	intron	A/G		tag SNP
rs2294436	8057688	intron	C/T		tag SNP
rs2743991	8060175	intron	A/G		tag SNP
rs9405369	8062437	intron	A/T
rs12207627	8062532	intron	A/G
rs2743989	8064035	intron	C/T
rs2815153	8064050	intron	C/T
rs2815154	8064084	intron	C/T
rs9328453	8065127	5' near gene	A/G
rs2815155	8065230	5' near gene	C/T
rs12660697	8065707	5' near gene	A/G
rs9392956	8065769	5' near gene	C/T
rs9392957	8065781	5' near gene	A/C
rs9505351	8066286	5' near gene	G/T

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ISSN: 1478-6362

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