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Table 1 SNP association analysis of the 18 SNPs in all cases and controls

From: Replicated associations of TNFAIP3, TNIP1 and ETS1 with systemic lupus erythematosus in a southwestern Chinese population

Gene and SNP Position a Minor allele Minor allele frequency P value Corrected P value b Odds ratio (95% confidence interval)
    Case Control    
FCGR3A        
   rs11581823 1:161517384 C 0.0830 0.0975 0.28   0.84 (0.62 to 1.14)
   rs7539036 1:161512731 T 0.0580 0.0714 0.25   0.80 (0.56 to 1.14)
FCGR2A        
   rs4656308 1:161478751 C 0.1602 0.1456 0.36   1.12 (0.88 to 1.42)
   rs1801274 1:161479745 G 0.3565 0.34 0.43   1.08 (0.90 to 1.29)
TNFAIP3        
   rs5029924 6:138187498 T 0.0817 0.0470 0.0017 0.030 1.80 (1.25 to 2.61)
   rs5029937 6:138195151 T 0.0812 0.0448 0.0006 0.012 1.88 (1.30 to 2.73)
   rs2230926 6:138196066 G 0.0811 0.0448 0.0007 0.012 1.88 (1.30 to 2.72)
   rs610604 6:138199417 G 0.0989 0.0984 1.00   1.00 (0.75 to 1.34)
TLR9        
   rs187084 3:52261031 C 0.3773 0.3722 0.82   1.02 (0.85 to 1.22)
   rs352140 3:52256697 A 0.3686 0.3635 0.82   1.02 (0.86 to 1.22)
   rs352162 3:52252969 G 0.3850 0.3770 0.72   1.04 (0.87 to 1.24)
TREX1        
   rs2242150 3:48505964 A 0.3535 0.3340 0.35   1.09(0.91 to 1.31)
   rs3135941 3:48507667 C 0.0326 0.0392 0.47   0.82 (0.52 to 1.32)
ETS1        
   rs6590330 11:128311059 A 0.4258 0.3086 3.0 × 10-8 5.5 × 10 -7 1.66 (1.39 to 1.99)
   rs4937333 11:128330520 T 0.4814 0.3652 9.3 × 10 -8 1.7 × 10 -6 1.61 (1.35 to 1.92)
TNIP1        
   rs13168551 5:150462638 T 0.2211 0.2505 0.14   0.85 (0.69 to 1.05)
   rs7708392 5:150457485 G 0.2132 0.2587 0.02 0.39 0.78 (0.63 to 0.96)
   rs10036748 5:150458146 C 0.2196 0.2552 0.08   0.82 (0.66 to 1.02)
  1. Bold data are significant. aGenomic positions from NCBI Genome Build 37.1 (GRCh37) [56]. bP values calculated by Fisher's exact test and then corrected by the Bonferroni criterion.