Locus | Gene | Position | Variant | Pvalue (significance) | OR (CI) effect(size) | Autoimmune disease association | Function |
---|---|---|---|---|---|---|---|
ITGAM a | Intergrin alpha M | 16p11.2 (intronic) | rs9888739 (T) | 1.61×10-23 | 1.62 (1.47-1.78) |  | Phagocytosis |
FcγR | Fcγ receptors | Multiple(see text) | Multiple (see text) | Multiple (see text) | Multiple (see text) | UC | Phagocytosis |
PRDM1-ATG5 b | PR domain zinc finger protein 1-autophagy-related 5 homolog | 6q21-q22.1 (intergenic) | rs548234 (G) | 5.18×10-12 | 1.25 (1.17-1.33) |  | Autophagy and B-cell differentiation |
TNFAIP3 b | Tumor necrosis factor-alpha-induced protein | 6q23 (exonic) | rs2230926 (C) | 1.37×10-17 | 1.72 (1.52-1.94) | RA, CeID, UC, and PS | Ubiquitination |
TNIP1 e | TNFAIP3-interacting protein 1 | 5q32-q33.1 (intronic) | rs7708392 (C) | 3.8×10-13 | 1.27 (1.10-1.35) | PS |  |
UBE2L3 b | Ubiquitin-conjugating enzyme E2L 3 | 22q11.2- q13.1 (upstream) | rs463426 (G) | 1.48×10-16 | 0.78 (0.74-0.83) | CD, RA, and CeID |  |
ETS1 b | V-ETS avian erythroblastosis virus E26 oncogene homolog 1 | 11q23.3 (downstream) | rs6590330 (A) | 1.77×10-25 | 1.37 (1.29-1.45) | RA | Lymphocyte development and activation |
IKZF1 b | IKAROS family zinc finger 1 | 7p12 (upstream) | rs4917014 (C) | 2.75×10-23 | 1.23 (1.03-1.42) |  |  |
CD44 d | CD44 | 11p13 (upstream) | rs507230 | 3.98×10-12 | 0.71 (0.63-0.79) |  |  |
BANK1 c | B-cell sca3 old protein with ankyrin repeats 1 | 4q22-q24 (exonic) | rs10516487 (G) | 3.7×10-10 | 1.38 (1.25-1.53) | RA | B-cell activation and signaling |
BLK b | B lymphoid tyrosine kinase | 8p23-p22 (upstream) | rs7812879 (A) | 2.09×10-24 | 0.69 (0.64-0.74) | RA |  |
LYN a | V-yes-1 Yamaguchi sarcoma viral-related oncogene homolog | 8q13 (intronic) | rs7829816 (C) | 5.40×10-9 | 0.77 (0.70-0.84) |  |  |
RasGRP3 b | RAS guanyl releasing protein 3 (calcium and DAG-regulated) | 2p25.1-p24.1 (intronic) | rs13385731 (G) | 1.25×10-15 | 0.70 (0.64-0.76) |  |  |
NCF2 f | Neutrophil cytosolic factor 2 | 1q25(intronic) | rs10911363 (T) | 2.87×10-11 | 1.18 (1.10-1.30) |  |  |
STAT4 b | Signal transducer and activator of transcription 4 | 2q32.2-q 32.3 (intronic) | rs7574865 (A) | 5.17×10-42 | 1.51 (1.43-1.61) | RA, IBD, T1D, and Sjögren's syndrome | T-cell development and signaling |
PTPN22 e | Protein tyrosine phosphatase non-receptor type 22 | 1p13 (exonic) | rs2476601 (A) | 3.4×10-12 | 1.35 (1.24-1.47) | T1D and Graves' disease |  |
TNFSF4 b | Tumor necrosis factor (ligand) superfamily member 4 | 1q25 (upstream) | rs2205960 (A) | 2.5×10-32 | 1.46 (1.37-1.56) |  |  |
HLA-DRB1 e | HLA class II histocompatibility antigen | 6p21.3(downstream) | rs3135394 (G) | 2.0×10-60 | 1.98 (1.84-2.14) | T1D, RA, CeID, IBD, and CD | Antigen presentation |
SLC15A4 b | Solute carrier family 15, member 4 | 12q24.32 (exonic) | rs10847697 (A) | 3.54×10-11 | 1.26 (1.17-1.34) |  |  |
IRF5 e | Interferon regulatory factor 5 | 7q32(3' untranslated region) | rs2070197 (C) | 5.8×10-24 | 1.88 (1.78-1.95) | Rheumatic disease and RA | Interferon regulation and production |
IRF7 a | Interferon regulatory factor 7 | 11p15.5(downstream) | rs4963128 (T) | 3.0×10-10 | 0.78 (0.73-0.85) | T1D |  |
IRF8 f | Interferon regulatory factor 8 | 16q24.1 (downstream) | rs2280381 (A) | 1.24×10-8 | 1.17 (1.10-1.24) | UC and MS |  |
IFIH1 f | Interferon-induced helicase C domain- containing protein 1 | 2q24 (exonic) | rs1990760 (T) | 1.63×10-8 | 1.23 (1.09-1.39) |  |  |
TYK2 f | Tyrosine kinase 2 | 19p13.2(intronic) | rs280519 (A) | 3.88×10-8 | 1.29 (1.15-1.47) | MS |  |
LRRC18- | Leucine-rich repeat | 10q11.22-q11.23 | rs1913517 (A) | 7.22×10-12 | 1.24 (1.17-1.32) |  | Unknown function |
WDFY4 b | containing 18-WD repeat and FYVE domain-containing protein 4 | (intergenic) | Â | Â | Â | Â | Â |
PXK a | PX domain containing serine/threonine kinase | 3p14.3(intronic) | rs6445975 (C) | 7.10×10-9 | 1.25 (1.16-1.35) | RA |  |
JAZF1 e | Juxtaposed withanother zinc finger gene 1 | 7p15 (intronic) | rs849142 (T) | 1.5×10-9 | 1.19 (1.13-1.26) |  |  |
UHRF1BP1 e | UHRF-binding protein 1 | 6q23(exonic) | rs11755393 (G) | 2.2×10-8 | 1.17 (1.10-1.24) |  |  |
XKR6 a | XK, Kell blood group complex subunit- related family, member36 | 8p23.1(intronic) | rs6985109 (G) | 2.51×10-11 | 1.23 (1.16-1.30) |  |  |