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Table 2 Haplotypes of IRF5 used to select polymorphisms.a

From: Identification of three new cis-regulatory IRF5 polymorphisms: in vitro studies

Haplotypeb % rs4731530 rs2402941 rs6968225 rs6968508 rs4728141 rs729302 rs2402940 rs754281 rs11768806 rs4728142 rs1874330 rs3778754 rs3757388 rs3757387 rs3757385 rs3807135 rs2004640 rs3807307 rs752637 rs3823536 rs3778753 c rs3807306 EXON 6 INDEL rs10954213 rs13242262 rs10488630 rs10488631 rs2280714 rs4731535
4 24.7 C G C C C A C C C A T G A C G C T C C A G T A A T G T T T
4 1.1 - - - - - - - - - - - - - - - - - - - - - G - - - - - - -
4 3.2 T - - - - - - - - - - - - - - - - - - - - - - - - - - - -
na 1.6 - - - - - - - - - - - - - - - - - - T - - - - - - - - - -
5 3.2 - - - - - - - - - - - - - - - - - - - - - - - - - A - - -
6 6.8 - - - - - - - - - - - - - - - - - - - - - - G - - A C - C
6 2.6 - - - - - - - - - G - - - - - - - - - - - - G - - A C - C
na 1.6 - - - - T - - - - G - - - T - - - - T - - - - - - A - - -
na 1.6 T - - - T C - - - - - - - - - - - - - - - - - - - - - - -
na 2.6 - - - - T - - - - G - C - T - - - T - G A G G G A A - - C
na 1.1 - - - - T - - - - G - C - T - - - T T G A G G G A A - - C
3 7.9 T A G G T - T T T G C C G T T T G T T G A G G G A A - C C
3 1.1 T A G G T - T - - G - C G T T T G T T G A G G G A A - C C
3 2.6 T - - - - - T T T G C C G T T T G T T G A G G G A A - C C
2 7.9 T - - - T C - - - G - C G T T T G T T G A G G G A A - C C
2 1.1 T - - - T C - - - G - C G T T T G T T G A G G G A A - C C
2 3.2 - - - - T C - - - G - C G T T T G T T G A G G G A A - C C
1 5.3 T - - - T C - - - G - C - T - - G T - G A G - - - A - - -
na 3.2 - - - - T C - - - G - C - T - - G T - G A G - - - - - - -
na 3.2 T - - - T C - - - G - C G T T T G T T G A - - - - - - - -
  1. aDashes represent the same allele as the uppermost sequence. Minor alleles >50% concordant with the C allele of rs729302 are in bold, and the name of the polymorphism is also in bold. IRF5 tag single-nucleotide polymorphisms (SNPs) are in italics. The eight SNPs with high correlation with rs729302 are not represented. bHaplotype numbers are as previously described. na = not applicable for lack of correspondence. cThree completely redundant SNPs