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Table 2 Haplotypes of IRF5 used to select polymorphisms.a

From: Identification of three new cis-regulatory IRF5 polymorphisms: in vitro studies

Haplotypeb

%

rs4731530

rs2402941

rs6968225

rs6968508

rs4728141

rs729302

rs2402940

rs754281

rs11768806

rs4728142

rs1874330

rs3778754

rs3757388

rs3757387

rs3757385

rs3807135

rs2004640

rs3807307

rs752637

rs3823536

rs3778753 c

rs3807306

EXON 6 INDEL

rs10954213

rs13242262

rs10488630

rs10488631

rs2280714

rs4731535

4

24.7

C

G

C

C

C

A

C

C

C

A

T

G

A

C

G

C

T

C

C

A

G

T

A

A

T

G

T

T

T

4

1.1

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

G

-

-

-

-

-

-

-

4

3.2

T

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

na

1.6

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

T

-

-

-

-

-

-

-

-

-

-

5

3.2

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

A

-

-

-

6

6.8

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

G

-

-

A

C

-

C

6

2.6

-

-

-

-

-

-

-

-

-

G

-

-

-

-

-

-

-

-

-

-

-

-

G

-

-

A

C

-

C

na

1.6

-

-

-

-

T

-

-

-

-

G

-

-

-

T

-

-

-

-

T

-

-

-

-

-

-

A

-

-

-

na

1.6

T

-

-

-

T

C

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

na

2.6

-

-

-

-

T

-

-

-

-

G

-

C

-

T

-

-

-

T

-

G

A

G

G

G

A

A

-

-

C

na

1.1

-

-

-

-

T

-

-

-

-

G

-

C

-

T

-

-

-

T

T

G

A

G

G

G

A

A

-

-

C

3

7.9

T

A

G

G

T

-

T

T

T

G

C

C

G

T

T

T

G

T

T

G

A

G

G

G

A

A

-

C

C

3

1.1

T

A

G

G

T

-

T

-

-

G

-

C

G

T

T

T

G

T

T

G

A

G

G

G

A

A

-

C

C

3

2.6

T

-

-

-

-

-

T

T

T

G

C

C

G

T

T

T

G

T

T

G

A

G

G

G

A

A

-

C

C

2

7.9

T

-

-

-

T

C

-

-

-

G

-

C

G

T

T

T

G

T

T

G

A

G

G

G

A

A

-

C

C

2

1.1

T

-

-

-

T

C

-

-

-

G

-

C

G

T

T

T

G

T

T

G

A

G

G

G

A

A

-

C

C

2

3.2

-

-

-

-

T

C

-

-

-

G

-

C

G

T

T

T

G

T

T

G

A

G

G

G

A

A

-

C

C

1

5.3

T

-

-

-

T

C

-

-

-

G

-

C

-

T

-

-

G

T

-

G

A

G

-

-

-

A

-

-

-

na

3.2

-

-

-

-

T

C

-

-

-

G

-

C

-

T

-

-

G

T

-

G

A

G

-

-

-

-

-

-

-

na

3.2

T

-

-

-

T

C

-

-

-

G

-

C

G

T

T

T

G

T

T

G

A

-

-

-

-

-

-

-

-

  1. aDashes represent the same allele as the uppermost sequence. Minor alleles >50% concordant with the C allele of rs729302 are in bold, and the name of the polymorphism is also in bold. IRF5 tag single-nucleotide polymorphisms (SNPs) are in italics. The eight SNPs with high correlation with rs729302 are not represented. bHaplotype numbers are as previously described. na = not applicable for lack of correspondence. cThree completely redundant SNPs
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Arthritis Research & Therapy

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