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Table 2 Quantitative PCR primer list a

From: Novel immortal human cell lines reveal subpopulations in the nucleus pulposus

Symbol

Gene name

Tissue

Forward primer

Reverse primer

ACAN

Aggrecan

AC, NP

GCAGCTGGGCGTTGTCA

TGAGTACAGGAGGCTTGAGGACT

CA12

Carbonic anhydrase XII

NP

ATCCAACTAATGCCACCACCAA

TGAGACCACGAAGAGACTGGCT

COL1A1

Collagen type I, collagen α1

AF

TGGAGAGTACTGGATTGACCCC

TGCAGAAGACTTTGATGGCATC

COL2A1

Collagen type II, collagen α1

AC, NP

TGGGTGTTCTATTTATTTATTGTCTTCCT

GCGTTGGACTCACACCAGTTAGT

COMP

Cartilage oligomeric matrix protein

AC

CAAGGCCAACAAGCAGGTTTG

CAGTTATGTTGCCCGGTCTCA

CD24

Cluster of differentiation 24

NP

CCACGCAGATTTATTCCAGTGA

GCCAACCCAGAGTTGGAAGTAC

FOXF1

Forkhead box F1

NP

CCCACACAGGAATTCTGCTGA

TTCCCCCACTTCTGCCATT

KRT19

Keratin 19

NC, NP

GCAGTCACAGCTGAGCATGAA

TCCGTTTCTGCCAGTGTGTCT

PAX1

Paired box 1

NP

AGAGCCTGACATCGCCTGTTAA

CGCTTTCCTTTATTCAGAGGCA

PTN

Pleiotrophin

NP

AGAAGCAATTTGGCGCGGA

TTCAGGTCACATTCTCCCCAGG

SOX9

SRY-box 9

AC, NP

AGTACCCGCACCTGCACAAC

CGCTTCTCGCTCTCGTTCAG

T

Brachyury T

NC

CCACCTGCAAATCCTCATCCT

TTGGAGAATTGTTCCGATGAGC

  1. aAC, Articular cartilage; AF: Annulus fibrosus; NC, Notochordal cell; NP, Nucleus pulposus. The sequences are the validated real-time primer sets used for the indicated genes that were subjected to quantitative PCR analysis. ‘Tissue’ column lists tissue in which marker expression is reported.