Table 2 Histone marks in the SNP linkage disequilibrium blocks in CD4+ T cells
From: Chromatin landscapes and genetic risk in systemic lupus
GWAS index SNP | Chr | Linkage disequilibrium blocks | Number of H3K27ac marks | Number of H3K4me1 marks | Number of H3K4me3 marks | Enhancer marks (yes/no) |
|---|---|---|---|---|---|---|
rs10028805 | 4 | 102736456–102762581 | 0 | 0 | 0 | No |
rs10036748 | 5 | 150457485–150461049 | 18 | 35 | 22 | Yes |
rs10488631 | 7 | 128585616–128711874 | 11 | 30 | 14 | Yes |
rs1059312 | 12 | 129277164–129288534 | 2 | 19 | 0 | Yes |
rs10774625 | 12 | 111884608–112007756 | 2 | 15 | 0 | Yes |
rs10807150 | 6 | 35154315–35278796 | 89 | 116 | 53 | Yes |
rs10936599 | 3 | 169477506–169528523 | 30 | 22 | 36 | Yes |
rs11644034 | 16 | 85967285–85980534 | 13 | 31 | 6 | Yes |
rs11889341 | 2 | 191943742–191970120 | 0 | 9 | 0 | Yes |
rs12022418 | 1 | 192521591–192535107 | 0 | 0 | 0 | No |
rs1270942 | 6 | 31704294–32175415 | 29 | 69 | 228 | Yes |
rs12802200 | 11 | 566936–567627 | 0 | 0 | 0 | No |
rs1610555 | 18 | 67523453–67544046 | 0 | 1 | 0 | Yes |
rs1801274 | 1 | 161470042–161479745 | 0 | 0 | 6 | Yes |
rs1885889 | 13 | 100084234–100104106 | 20 | 38 | 10 | Yes |
rs2009453 | 11 | 65399528–65405300 | 5 | 17 | 3 | Yes |
rs223881 | 16 | 57386566–57317134 | 0 | 0 | 0 | No |
rs2286672 | 17 | 4706123–4712617 | 0 | 7 | 7 | Yes |
rs2289583 | 15 | 75285114–75370012 | 4 | 66 | 14 | Yes |
rs2305772 | 19 | 52021247–52034940 | 0 | 0 | 0 | No |
rs2421184 | 5 | 158884119–158886939 | 0 | 3 | 0 | Yes |
rs2431697 | 5 | 159879978–159883217 | 0 | 0 | 0 | No |
rs2476601 | 1 | 114303808–114377568 | 65 | 53 | 25 | Yes |
rs2663052 | 10 | 50045456–50081232 | 0 | 0 | 0 | No |
rs2732549 | 11 | 35073852–35098193 | 23 | 47 | 0 | Yes |
rs2736340 | 8 | 11337587–11353000 | 0 | 2 | 11 | Yes |
rs2941509 | 17 | 37885383–38077485 | 228 | 342 | 116 | Yes |
rs3024505 | 1 | 206939904–206943968 | 1 | 47 | 0 | Yes |
rs34572943 | 16 | 31272353–31276811 | 0 | 11 | 0 | Yes |
rs3768792 | 2 | 213871709–213890232 | 0 | 0 | 2 | Yes |
rs3794060 | 11 | 71138710–71203790 | 14 | 29 | 28 | Yes |
rs4917014 | 7 | 50278187–50308811 | 59 | 59 | 5 | Yes |
rs4948496 | 10 | 63803472–63819903 | 41 | 53 | 27 | Yes |
rs61616683 | 22 | 39747050–39756650 | 0 | 0 | 0 | No |
rs6568431 | 6 | 106574794–106597639 | 4 | 34 | 0 | Yes |
rs6740462 | 2 | 65654364–65667272 | 0 | 28 | 28 | Yes |
rs6932056 | 6 | 138132123–138243700 | 97 | 117 | 53 | Yes |
rs740840 | 12 | 6327008–63600683 | 1 | 25 | 0 | Yes |
rs7444 | 22 | 21920817–21983260 | 5 | 133 | 13 | Yes |
rs7556469 | 1 | 198607998–198637582 | 166 | 41 | 126 | Yes |
rs7726414 | 5 | 133232663–13877357 | 309 | 809 | 318 | Yes |
rs7941765 | 11 | 128499000–128500215 | 8 | 9 | 2 | Yes |
rs849142 | 7 | 28162674–28200097 | 1 | 25 | 2 | Yes |
rs9462027 | 6 | 34563164–34828553 | 68 | 110 | 66 | Yes |
rs9652601 | 16 | 11164567–11207894 | 9 | 78 | 0 | Yes |
rs9782955 | 1 | 235907825–236041129 | 22 | 33 | 24 | Yes |