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Table 1 Histone marks in the SNP LD blocks in neutrophils and CD4 + T cells

From: Chromatin landscapes and genetic risk for juvenile idiopathic arthritis

LD region SNP Neutrophils CD4 + T cells
H3K4me1 mark H3K27ac mark H3K4me1 mark H3K27ac mark
chr1: 206940310 - 206947167 rs1800896 Y N Y Y
chr1: 25197155 - 25203390 rs4648881 Y N Y N
chr11: 36336263 - 36371757 rs4755450, rs7127214 N N N N
chr12: 111884608 - 111932800 rs3184504 Y Y Y Y
chr12: 112486818 - 112906415 rs17696736 Y Y Y Y
chr13: 40299842 - 40368601 rs7993214, rs9532434 N N Y N
chr13: 43056036 - 43066523 rs34132030 N N N N
chr16: 11400900 - 11435990 rs66718203 Y Y Y N
chr18: 12821903 - 12880206 rs7234029 Y Y Y Y
chr2: 100806514 - 100837567 rs10194635, rs6740838, rs1160542 Y N Y Y
chr2: 191900449 - 191935804 rs3821236 Y Y Y Y
chr2: 191943742 - 191970120 rs7574865 N N Y N
chr22: 24234493 - 24237862 rs755622 Y Y Y Y
chr3: 119125202 - 119243934 rs4688013, rs4688011 Y Y Y Y
chr3: 46253650 - 46350716 rs79893749 Y Y Y Y
chr4: 123141054 - 123548068 rs17388568 Y Y Y Y
chr6: 112359543 - 112448654 rs2280153 Y Y Y Y
chr6: 137959235 - 138006504 rs6920220 N N Y N
chr6: 31492453 - 31543031 rs1800629 N Y Y Y
chr7: 22774437 - 22811384 rs6946509, rs7808122 N N N N
chr7: 28152193 - 28243473 rs10280937, rs73300638 Y Y Y Y
chr9: 123636121 - 123723351 rs10818488 Y Y Y Y
chr9: 123640500 - 123706382 rs2900180 Y Y Y Y
  1. SNP single nucleotide polymorphism, LD linkage disequilibrium, chr chromosome, Y yes, N no