Table 1 Discovery and validation results from affected/unaffected comparison selected proteins
Protein | Discovery p value (FC) | Synthesised peptides | Validation p value (FC) |
|---|---|---|---|
P05090|APOD | 0.03 (2.55) | VLNQELR | 0.22 (1.51) |
NILTSNNIDVK | D | ||
P43897|TSFM | 0.04 (0.35) | GFLNSSELSGLPAGPDR | D |
TNLEDVGR | 0.15 (4.37) | ||
LGQHVVGMAPLSVGSLDDEPGGEAETK | D | ||
P62266|RPS23 | 0.01 (0.36) | AHLGTALK | 0.10 (2.39) |
VANVSLLALYK | D | ||
P30740|SERPINB1 | 0.04 (0.38) | TYNFLPEFLVSTQK | 0.46 (0.66) |
TYGADLASVDFQHASEDAR | D | ||
LGVQDLFNSSK | D | ||
P09936|UCHL1 | 0.00 (2.52) | LGVAGQWR | D |
LGFEDGSVLK | D | ||
NEAIQAAHDAVAQEGQC[+57]R | 0.01 (2.62) | ||
P02743|APCS | 0.02 (2.58) | VGEYSLYIGR | D |
IVLGQEQDSYGGK | 0.05 (5.54) | ||
Q53GQ0|HSD17B12 | 0.00 (0.37) | TIAVDFASEDIYDK | 0.41 (0.58) |
GVFVQSVLPYFVATK | D | ||
Q08752|PPID | 0.04 (2.50) | IVLELFADIVPK | N/D |
VFFDVDIGGER | D | ||
ILLITEDLK | 0.02 (1.69) | ||
Q8NHQ9|DDX55 | 0.04 (3.33) | DVAAEAVTGSGK | D |
SLDVLVLDEADR | 0.03 (4.40) | ||
TGLFSATQTQEVENLVR | D | ||
Q15154|PCM1 | 0.04 (2.98) | INFSDLDQR | N/D |
LPEMEPLVPR | N/D | ||
ALYALQDIVSR | N/D | ||
P14854|COX6B1 | 0.02 (5.26) | NC[+57]WQNYLDFHR | 0.02 (3.73) |
GGDISVC[+57]EWYQR | D | ||
Q99504|EYA3 | 0.02 (4.18) | LSSGDPSTSPSLSQTTPSKDTDDQSR | 0.49 (0.73) |
VLLYGLGEIFPIENIYSATK | D | ||
Q9Y262|EIF3L | 0.03 (0.38) | VYEIQDIYENSWTK | 0.28 (0.64) |
VFSDEVQQQAQLSTIR | D | ||
LAGFLDLTEQEFR | D |