Table 1 mRNA and ncRNA expression profiles of IDD deposited in gene expression omnibus
Data accession number | Types of RNA profiling | Platform | BioProject | Samples | Control set | Publication year | Contributors |
|---|---|---|---|---|---|---|---|
GSE19943 | miRNAs | GPL9946 Exiqon human miRCURY LNAâ„¢ microRNA Array V11.0 | PRJNA120173 | GSM498350 GSM498351 GSM498352 GSM498353 GSM498354 GSM498355) | 3 control (scoliosis) vs. 3 degenerative nucleus pulposus (NP) cell samples, extracted from NP tissue without cultures | 2011 | Wang et al. [18] |
GSE45856 | miRNAs | GPL11434 miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno | PRJNA196506 | GSM1116694 GSM1116695 GSM1116696 GSM1116697 GSM1116698 GSM1116699 | 3 control (traumatic normal) vs. 3 degenerative IVD tissues using TRIspin method | 2013 | Zhao et al. [19] |
GSE56081 | mRNAs LncRNAs | GPL15314 Arraystar Human LncRNA microarray V2.0 (Agilent_033010 Probe Name version) | PRJNA242356 | GSM134764 GSM134765 GSM134766 GSM134767 GSM134768 GSM134769 GSM1347770 GSM134771 GSM134772 GSM134773 | 5 control (cadaveric normal) vs. 5 degenerative NP tissues using TRIspin method | 2014 | Wan et al. [13] |
GSE63492 | miRNAs | GPL19449 ExiqonmiRCURY LNA microRNA Array miRBase v18.0 | PRJNA268036 | GSM1551024 GSM1551025 GSM1551026 GSM1551027 GSM1551028 GSM1551029 GSM1551030 GSM1551031 GSM1551032 GSM1551033 | 5 control (cadaveric normal) vs. 5 degenerative NP tissues using TRIspin method | 2016 | Lan et al. [20] |
GSE67566 | circRNAs | GPL19978 Agilent-069978 Arraystar Human CircRNA microarray V1 | PRJNA280274 | GSM1649704 GSM1649705 GSM1649706 GSM1649707 GSM1649708 GSM1649709 GSM1649710 GSM1649711 GSM1649712 GSM1649713 | 5 control (cadaveric normal) vs. 5 degenerative NP tissues using TRIspin method | 2016 | Lan et al. [20] |
GSE67567 | Noncoding RNA SuperSeries | GPL15314 Arraystar Human LncRNA microarray V2.0 (Agilent_033010 Probe Name version) GPL19449 GPL19978 | PRJNA280271 | In combination | 5 control (cadaveric normal) vs. 5 degenerative NP tissues | 2016 | Lan et al. [20] |
GSE153761 | lncRNAs, mRNAs and circRNAs | GPL22120 Agilent-078298 human ceRNA array V1.0 4X180K | PRJNA643990 | GSM4653870 | 3 control (traumatic normal) vs. 3 degenerative cartilage endplate of cervical disc | 2020 | Yuan et al. |
GSM4653871 | |||||||
GSM4653872 | |||||||
GSM4653873 | |||||||
GSM4653874 | |||||||
GSM4653875 |