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Table 1 mRNA and ncRNA expression profiles of IDD deposited in gene expression omnibus

From: Emerging evidence on noncoding-RNA regulatory machinery in intervertebral disc degeneration: a narrative review

Data accession number Types of RNA profiling Platform BioProject Samples Control set Publication year Contributors
GSE19943 miRNAs GPL9946
Exiqon human miRCURY LNA™ microRNA Array V11.0
PRJNA120173 GSM498350
GSM498351
GSM498352
GSM498353
GSM498354
GSM498355)
3 control (scoliosis) vs. 3 degenerative nucleus pulposus (NP) cell samples, extracted from NP tissue without cultures 2011 Wang et al. [18]
GSE45856 miRNAs GPL11434
miRCURY LNA microRNA Array, 6th generation - hsa, mmu & rno
PRJNA196506 GSM1116694
GSM1116695
GSM1116696
GSM1116697
GSM1116698
GSM1116699
3 control (traumatic normal) vs. 3 degenerative IVD tissues using TRIspin method 2013 Zhao et al. [19]
GSE56081 mRNAs
LncRNAs
GPL15314
Arraystar Human LncRNA microarray V2.0 (Agilent_033010 Probe Name version)
PRJNA242356 GSM134764
GSM134765
GSM134766
GSM134767
GSM134768
GSM134769
GSM1347770
GSM134771
GSM134772
GSM134773
5 control (cadaveric normal) vs. 5 degenerative NP tissues using TRIspin method 2014 Wan et al. [13]
GSE63492 miRNAs GPL19449
ExiqonmiRCURY LNA microRNA Array
miRBase v18.0
PRJNA268036 GSM1551024
GSM1551025
GSM1551026
GSM1551027
GSM1551028
GSM1551029
GSM1551030
GSM1551031
GSM1551032
GSM1551033
5 control (cadaveric normal) vs. 5 degenerative NP tissues using TRIspin method 2016 Lan et al. [20]
GSE67566 circRNAs GPL19978
Agilent-069978 Arraystar Human CircRNA microarray V1
PRJNA280274 GSM1649704
GSM1649705
GSM1649706
GSM1649707
GSM1649708
GSM1649709
GSM1649710
GSM1649711
GSM1649712
GSM1649713
5 control (cadaveric normal) vs. 5 degenerative NP tissues using TRIspin method 2016 Lan et al. [20]
GSE67567 Noncoding RNA SuperSeries GPL15314 Arraystar Human LncRNA microarray V2.0 (Agilent_033010 Probe Name version)
GPL19449
GPL19978
PRJNA280271 In combination 5 control (cadaveric normal) vs. 5 degenerative NP tissues 2016 Lan et al. [20]
GSE153761 lncRNAs, mRNAs and circRNAs GPL22120
Agilent-078298 human ceRNA array V1.0 4X180K
PRJNA643990 GSM4653870 3 control (traumatic normal) vs. 3 degenerative cartilage endplate of cervical disc 2020 Yuan et al.
GSM4653871
GSM4653872
GSM4653873
GSM4653874
GSM4653875